search for: rowmeans

...i.e. zz[1,2:3] averaged and placed in average_value[1,2] and so on. below is my script but it seems to be stuck in an endless loop Any suggestions?? for (i in 1:length(average_value[,1])) { average_value[i] <- i^100; print(average_value[i]) #calculates Meanss #Sample A average_value[i,2] <- rowMeans(zz[i,2:3]) average_value[i,3] <- rowMeans(zz[i,4:5]) average_value[i,4] <- rowMeans(zz[i,6:7]) average_value[i,5] <- rowMeans(zz[i,8:9]) average_value[i,6] <- rowMeans(zz[i,10:11]) #Sample B average_value[i,7] <- rowMeans(zz[i,12:13]) average_value[i,8] <- rowMeans(zz[i,14:15]) a...

...et of values (i.e. zz[1,2:3] > averaged and placed in average_value[1,2] and so on. > below is my script but it seems to be stuck in an endless > loop > Any suggestions?? > > for (i in 1:length(zz[,1])) { > > #calculates Meanss > #Sample A > average_value[i,2] <- rowMeans(zz[i,2:3]) > average_value[i,3] <- rowMeans(zz[i,4:5]) > average_value[i,4] <- rowMeans(zz[i,6:7]) > average_value[i,5] <- rowMeans(zz[i,8:9]) > average_value[i,6] <- rowMeans(zz[i,10:11]) > > #Sample B > average_value[i,7] <- rowMeans(zz[i,12:13]) > average_...

Hi, May be this helps: ?set.seed(24) ?mydata4<- as.data.frame(matrix(sample(1:100,10*38,replace=TRUE),ncol=38)) ?dim(mydata4) #[1] 10 38 ?library(matrixStats) res<-do.call(cbind,lapply(1:400, function(i) {permutation<-sample(mydata4); (rowMeans(permutation[,1:27])-rowMeans(permutation[,28:38]))/(rowSds(permutation[,1:27])+rowSds(permutation[,28:38]))} )) ?dim(res) #[1]? 10 400 A.K. >I want to do permutation test and then get a PGC score 400 times on mydata4 (microarray data) > >I use 2 functions as below: >1. permutation&...

Hello, I am trying to create parcels for a CFA model. I am trying to average 6 sets of 3 variables each into parcels. I don't understand why I am getting an error message as follows: Thanks for your help, Catherine atds1par <- rowMeans(semHW1dat1[, c("atds1", "atds2", "atds3")], na.rm=TRUE) atds2par <- rowMeans(semHW1dat1[, c("atds4", "atds5", "atds6")], na.rm=TRUE) atds3par <- rowMeans(semHW1dat1[, c("atds7", "atds8", "atds9")], na....

I would like to calculate the mean of tree leader increment growth over 5 years (I1 through I5) where each tree is a row and each row has 5 columns. So far I have achieved this using rowMeans when all columns are numeric type and used in the calculation: Data1 <- data.frame(cbind(I1 = 3, I2 = c(0,3:1, 2:5,NA), I3 =c(1:4,NA,5:2),I4=2,I5=3)) Data1 Data1$mean_5 <- rowMeans(Data1, na.rm =T) Data1 My real dataset has many columns including several Factor type. Is it possible to speci...

...his: X1 X2 X3 X4 X5 X6 X7 X8 1 2 2 1 2 3 2 6 2 3 2 5 7 9 1 3 1 9 12 6 1 1 3 6 The columns X1-X6 contains ordinary numeric values. X7 contains the number of the first column that the rowMeans should be calculated from and X8 contains the last column that should be included in the rowMeans. when I try test <- (df[,df$X7:df$X8]) the rowMeans are calculated based on the values in the X7 and X8 in the first row only. Thanks in advance! /Marine

...5 What I want to do is to make a new matrix called 'data2', which would be transformed by subtracting the mean of each row from matrix 'data'. There are some 'NA's in the matrix and I do want to keep it. I tried to take 'mean's from each row first by using: a<- rowMeans(data[,3:85],na.rm = FALSE) but I got: > a<- rowMeans(data[,3:85],na.rm = FALSE) Error in rowMeans(data[, 3:85], na.rm = FALSE) : 'x' must be numeric Can anybody suggest me how to get around this? Thank you very much! Allen [[alternative HTML version deleted]]

Dear List, I'm not even sure this is an issue or not, but ?rowMeans has: Value: A numeric or complex array of suitable size, or a vector if the result is one-dimensional. The ?dimnames? (or ?names? for a vector result) are taken from the original array. If there are no values in a range to be summed over (after removing missing values w...

In R 3.3.3, I observe the following on Ubuntu 16.04 (when building from source as well as for the sudo apt r-base build): > x <- c(NA, NaN) > mean(x) [1] NA > mean(rev(x)) [1] NaN > rowMeans(matrix(x, nrow = 1, ncol = 2)) [1] NA > rowMeans(matrix(rev(x), nrow = 1, ncol = 2)) [1] NaN > .rowMeans(x, m = 1, n = 2) [1] NA > .rowMeans(rev(x), m = 1, n = 2) [1] NaN > .rowSums(x, m = 1, n = 2) [1] NA > .rowSums(rev(x), m = 1, n = 2) [1] NaN > rowSums(matrix(x, nrow = 1, n...

...<- as.data.frame(matrix(rnorm(100), nrow = 10)) And let's put some missing values data[sample(1:10, 3), sample(1:10, 3)] <- NA I want to replace all NA's by row averages or column averages of my matrix. I tried to use(with my original data matrix) data[is.na(data)] <- rowMeans(data, na.rm = TRUE) But got an error message of Error in rowMeans(data, na.rm = TRUE) : 'x' must be numeric Then I converted data<- as.matrix(data) data<- as.numeric(data) And applying my code data[is.na(data)] <- rowMeans(data, na.rm = TRUE) Error...

Hello , I can not get apply function to do what I want when doing stuff on rows. Let's say I want to divide the rows of matrix by their mean, the below show you get the same result weather you use 1 or 2, i.e. same result for columns than for means..:( Thanks a lot for the help, m = matrix( c(1,4,7,4,5,8,7,8,9), nrow = 3 ) divideByMean = function( v ){ return(

Hi, I have a list in which element is a vector (all of the same length and all numeric). I want to find the mean of the first elements of the vectors, the mean of the second elements of the vectors and so on. Currently I convert the list to a data.frame and apply rowMeans(). But is there a way to to do this directly on the list? I seem to recall a post in which there was such a function (or expression) but I just cant seem to find it. Could somebody point me in the right direction? ------------------------------------------------------------------- Rajarshi Guha &...

...oo <- list() for(i in 1:10){ # The real data are read in from a series of numbered text files foo[[i]] <- data.frame(x1 = rnorm(100), x2 = rnorm(100), x3 = rnorm(100), x4 = rnorm(100), x5 = rnorm(100), x6 = rnorm(100)) } str(foo) # by hand mean.x1 <- rowMeans(cbind(foo[[1]][,1],foo[[2]][,1],foo[[3]][,1],foo[[4]][,1],foo[[5]][ ,1]), foo[[6]][,1],foo[[7]][,1],foo[[8]][,1],foo[[9]][,1 ],foo[[10]][,1])) mean.x2 <- rowMeans(cbind(foo[[1]][,2],foo[[2]][,2],foo[[3]][,2],foo[[4]][,2],foo[[5]][ ,2]), foo[[6]...

...4,0.285);#for Trt 4 for (t in 4){ assign(paste("Trt",t,sep=""),rmultinom(10, size = 5, prob=probTrt[t,])); } But the following does not work. for (t in 4){ assign(paste("Trt",t,sep=""),rmultinom(10, size = 5, prob=probTrt[t,])); rowMeans(paste("Trt",t,sep="")); } How can I use it in functions like rowMeans so that I don't have to type all the object names? Thank you. Kyeongmi [[alternative HTML version deleted]]

...ould be exactly the same except that the AAA column would be 6 comes from (11 + 1)/2 7 comes from (12 + 2)/2 3 stays 3 because the element in the other AAA is zero so i don't want to average that one. it shoulsd just stay 3. So, I do DF[DF == 0]<-NA rowaverage<-function(x) x[rowMeans(forecastDf[x],na.rm=TRUE) revisedDF<-tapply(seq(DF),names(DF),rowmeans) there are two problems with this : 1) i need to go through the rows of the same name, not the columns so i don't think seq(DF) is right because that goes through the columns but i want to go through rows. 2) BBB will...

Dear all, I have a matrix with positive and negative values. >From this I would like to produce 2 matrices: 1st - retaining positives and putting NA in other positions 2nd - retaining negatives and putting NA in other positions and then apply rowMeans for both. I am trying to use the function ifelse in the exemplified form: ifelse(A>0,A,NA) but by putting A as a 2nd parameter it changes dimensions of the original object. I wonder if I can do this, as it seems not to difficult. thanks in advance [[alternative HTML version deleted]]

...have 8 subjects in each cell (a balanced design) and we want to specify the interaction contrast so that: CueLeft>CueRght for the Right Hemisphere CueRght>CueLeft for the Left Hemisphere. Here is a copy of the relevant commands for R: ######################################## lh_cueL <- rowMeans( LHroi.cueL[,t1:t2] ) lh_cueR <- rowMeans( LHroi.cueR[,t1:t2] ) rh_cueL <- rowMeans( RHroi.cueL[,t1:t2] ) rh_cueR <- rowMeans( RHroi.cueR[,t1:t2] ) roiValues <- c( lh_cueL, lh_cueR, rh_cueL, rh_cueR ) cuelabels <- c("CueLeft", "CueRight") hemlabels <- c("...

...3.3.3, I observe the following on Ubuntu 16.04 (when building >> from source as well as for the sudo apt r-base build): >> >>> x <- c(NA, NaN) >>> mean(x) >> >> [1] NA >>> >>> mean(rev(x)) >> >> [1] NaN >> >>> rowMeans(matrix(x, nrow = 1, ncol = 2)) >> >> [1] NA >>> >>> rowMeans(matrix(rev(x), nrow = 1, ncol = 2)) >> >> [1] NaN >> >>> .rowMeans(x, m = 1, n = 2) >> >> [1] NA >>> >>> .rowMeans(rev(x), m = 1, n = 2) >> >&...

...age") [1] "oligoClasses" > class(phenoData) [1] "standardGeneric" attr(,"package") [1] "methods" > eset <- rma(test) Background correcting Normalizing > e <- exprs(eset) > index1 <- 1:5 > index2 <- 6:10 > d <- rowMeans(e[, index1]) - rowMeans(e[, index2]) > design <- model.matrix(~factor(eset$Key)) > fit <- lmFit(eset, design) > ebayes <- eBayes(fit) > sample <- row.names(ebayes) > Pvalue <- ebayes$p.value[,2] > Mean1 <- rowMeans(e[,index1]) > Mean2 <- rowMeans(e...

Hi all, I have a csv matrix "KT.csv" and it has Inf and NA I want to calculate the mean of each row so I use rowMeans(KT,na.rm = TRUE) but with this Inf cannot be omminted. I?m trying to use before running rowMeans(KT,na.rm = TRUE) KT<-range(KT,finite=TRUE) but it doesn?t works... Do you know a simple way to ommit Inf en the calculations? Many thanks. I have tried also to replace Inf by NA bt also I dind?...