search for: rmsep

Hi, I want to calculate PLS package in R. Now I want to calculate R, MSEP, RMSEP and R2 of PLSR and PCR using this. I also add this in library of R. How I can calculate R, MSEP, RMSEP and R2 of PLSR and PCR in R. I s any other method then please also suggest me. Simply I want to calculate these value. Thanking you. -- Nitish Kumar Mishra Junior Research Fellow BIC, IMTECH, Cha...

Hi R-listers, I would like to know how can i extract component no. when the RMSEP is lowest? Currently, I only plot it manually and then only feed the ncomp to the jack knife command. However, I would like to automate this step. Please let me know. Many thanks. Rgrds, [[alternative HTML version deleted]]

hi R help group, I have installed PLS package in R and use it for princomp & prcomp commands for calculating PCA using its example file(USArrests example). But How I can use PLS for Partial least square, R square, mvrCv one more think how i can import external file in R. When I use plsr, R2, RMSEP it show error could not find function plsr, RMSEP etc. How I can calculate PLS, R2, RMSEP, PCR, MVR using pls package in R. Thanking you........ -- Nitish Kumar Mishra Junior Research Fellow BIC, IMTECH, Chandigarh, India E-Mail Address: nitish_km at yahoo.com nitish at imtech.res.in

Dear all , I want to do PRESS (prediction error sums of squares) or the residual mean square error of prediction (RMSEP) which will give me value that is valid for 'future predictions of independent data'. I am using different methods for example, Multiple Linear Regression, LASSO regression, Ridge Regression, Elastic Net regression etc. I am wandering if there are some package(s) in "R" or some w...

...lsrcue<- plsr(cue~fb+cn+n+ph+fung+bact+resp, data = cue, ncomp=7, na.action = NULL, method = "kernelpls", scale=FALSE, validation = "LOO", model = TRUE, x = FALSE, y = FALSE) summary(plsrcue) and I got this output, where I think I can choose the number of components based on RMSEP, but how do I choose it? Data: X dimension: 33 7 Y dimension: 33 1 Fit method: kernelpls Number of components considered: 7 VALIDATION: RMSEP Cross-validated using 33 leave-one-out segments. (Intercept) 1 comps 2 comps 3 comps 4 comps 5 comps 6 comps 7 comps CV 0.09854 0.0...

...(svm.lin, hogTest$X) e.test.lin <- sqrt(sum((results.lin-hogTest$Y)^2)/length(hogTest$Y)) return(e.test.lin) } } cl<- makeCluster(10, type="SOCK" ) clusterEvalQ(cl,library(e1071)) clusterExport(cl,c("data.X","data.Y","NR","cost1")) RMSEP<-clusterApplyLB(cl,cost1,sv.lin) stopCluster(cl) -- View this message in context: http://old.nabble.com/SVM-Param-Tuning-with-using-SNOW-package-tp26399401p26399401.html Sent from the R help mailing list archive at Nabble.com.

Hi, I work with hyperspectral remote sensing data and I try to built a pls model with this data. I already built the model but if I try to calculate the RMSEP and R2 with a test data set I get the following error message: Error: variable 'subX' was fitted with type "nmatrix.501" but type "nmatrix.73" was supplied The problem is that I don't get the message for the pls models. Thank you very much for your help. /Thoma...

...artial least square regression in R. I have looked up the instructions and the manual from Bjorn Mevi and Ron Wehrens. However, I think I managed to write the script correctly, but I dont understand the output on the R environment, and also how to decide on the number of components to use (from the RMSEP), and also how to do a correlation plot. I welcome any help or advice! Thanks! Margarida Soares PhD Student MEMEG, Department of Biology Lund University

...r observations with missing values, if na.action is na.exclude. - `ncomp' is now reduced when it is too large for the requested cross-validation. - Line plot parameter arguments have been added to predplotXy(), so one can control the properties of the target line in predplot(). - MSEP(), RMSEP(), loadings(), loadingplot() and scoreplot() are now generic. See the file CHANGES in the sources for all changes. -- Ron Wehrens and Bj??rn-Helge Mevik _______________________________________________ R-packages mailing list R-packages at stat.math.ethz.ch https://stat.ethz.ch/mailman/listin...

...r observations with missing values, if na.action is na.exclude. - `ncomp' is now reduced when it is too large for the requested cross-validation. - Line plot parameter arguments have been added to predplotXy(), so one can control the properties of the target line in predplot(). - MSEP(), RMSEP(), loadings(), loadingplot() and scoreplot() are now generic. See the file CHANGES in the sources for all changes. -- Ron Wehrens and Bj??rn-Helge Mevik _______________________________________________ R-packages mailing list R-packages at stat.math.ethz.ch https://stat.ethz.ch/mailman/listin...

I have switched from The Unscrambler to R for pls regression analysis and have been able to calculate scores, coefficients, RMSEP from a large number of PLS1 and PLS2 models. The ultimate goal is to use these models for predicting unknown samples, which again is straight-forward with the built-in predict() function. However, I?m struggling with prediction uncertainty (i.e. confidence intervals) on predicted values (as an esti...

Dear all: I am comparing the PLS outputs of R and SAS for the following data set: Y x1 x2 x3 3 6 2 2 3 1 5 5 4 7 4 1 5 6 5 6 2 4 3 2 8 5 0 9 where Y is the dependent variable and x1, x2, x3 are the independent variables. I found several PLS algorithms in R (NIPALS,SIMPLS,KERNEL PLS). SAS has SIMPLS and NIPALS. The following are the NIPALS calculations of

Dear R-help users, I'd like to use the R-package "pls" and want to extract the explained Y-variance to identify the important (PLS-) principal components in my model, related to the y-data. For explained X-variance there is a function: "explvar()". If I understand it right, the summary() function gives an overview, where the y-variance is shown, but I can't

Hi How to get p-value and the standard error in PLS I have used the following function to calculate PLS fit1 <- mvr(formula=Y~X1+X2+X3+X4, data=Dataset, comp=4) Please help me -- View this message in context: http://r.789695.n4.nabble.com/getting-p-value-and-standard-error-in-PLS-tp3914760p3914760.html Sent from the R help mailing list archive at Nabble.com.

In the lm function the summary(lmobject) we have adjusted.r square and f statistics Do we have similar to the pls package and how to get it -- View this message in context: http://r.789695.n4.nabble.com/R-square-and-F-stats-in-PLS-tp3924484p3924484.html Sent from the R help mailing list archive at Nabble.com.