search for: rmse

...aMDS(sp.rich) Error in metaMDS(sp.rich) : object 'sp.rich' not found > mdsg.mds<- metaMDS(mdsg) Square root transformation Wisconsin double standardization Run 0 stress 10.62813 Run 1 stress 14.73774 Run 2 stress 11.19939 Run 3 stress 10.61520 ... New best solution ... procrustes: rmse 0.005646588 max resid 0.009332332 Run 4 stress 10.61520 ... New best solution ... procrustes: rmse 0.0001009763 max resid 0.0001754211 *** Solution reached > mdsg.mds.ALT<- metaMDS(mdsg, distance="euclidean", k=3, trymax=50, autotransform=FALSE) Run 0 stress 3.020817 Run 1 st...

...n, R. C., & Mitchell, J. B. O. (2007). Random Forest Models To Predict Aqueous Solubility. Journal of Chemical Information and Modeling, 47, 150-158. my problem is the following using data(airquality) : the tunning parameters with the lower value is: > print(result.mtry.df[result. mtry.df$RMSE == min(result.mtry.df$RMSE),]) *RMSE = 15.44751 MSE = 238.6257 mtry = 3 nodesize = 5 tree = 35* the numer of tree is very low, different respect how i can read in several pubblications And the second value lower is a tunning parameters with *tree = 1* print(head(result.mtry.df[with(result.mtry....

...surf.vert.tot>76)<1 | sum(tab$surf.vert.tot<15)<1,400,-max(tab$sum.T.levee[tab$surf.vert.tot>76],na.rm=T)+min(tab$sum.T.levee[tab$surf.vert.tot<15],na.rm=T)), b=tab$sum.T.levee[abs(tab$surf.vert.tot-90)==min(abs(tab$surf.vert.tot-90),na.rm=T)]),data=tab,control=list(maxiter=100)) rmse.log<-sqrt(mean(residuals(fit.log)^2)) rmse.exp<-sqrt(mean(residuals(fit.exp)^2)) rmse.gomp<-sqrt(mean(residuals(fit.gomp)^2)) data.frame(rmse.log=rmse.log,rmse.gomp=rmse.gomp,rmse.exp=rmse.exp,semis=unique(tab$semis),densite=unique(tab$densite),traitement=unique(tab$traitement),bloc=uni...

...sets of results. I am running several analyses in a loop and iteratively adding the results to a *list* ("combined"). Within each iteration I use the following: > combined[[i]] <- performance(fit) With two iterations I get the following list, as output to a CSV: object.RMSE object.R2 object.RMSE.1object.R2.1 WA.inv 0.321543059 0.86388897 0.350494954 0.882600618 WA.cla 0.345947482 0.86388897 0.373078015 0.882600618 WA.inv.tol 0.308649941 0.874585589 0.336975196 0.89148291 WA.cla.tol 0.330038831 0.874585589 0.356895789 0.89148291 Obviously if I run thou...

...this behavior is not what was intended, and a bug was introduced. If the former, this should be explained to the user somewhere. If the latter, can someone track it down and fix? John Nolan #------------------------------------------------- par(mfrow=c(2,1)) for (i in 1:2) { x <- 1:100 rmse <- sin(x/5) # fake data plot(x,rmse) str1 <- bquote( paste("RMSE(",theta,"), ",i==.(i) )) title( str1 ) } #------------------------------------------------- ........................................................................... John P. Nolan Math/Stat De...

Hi R users This is not related to R but general stats terms. I f any one help me to figure out how they differ and when I need to use which one, i will appreciate it. I read several simulation studies and found that RMSE (Root Mean Square Error) and RMSD (Root Mean Square Difference) appered to be used interchangeablely. The formula for calculating for both RMSE and RMSD are, to me, the same. Are they the same or am I misunderstood ? TM

Hi, Does anyone know if the RMSE is one of the values provided by the lm model, or do we have to calculate it by hand from the residuals? Thanks, -- Tom [[alternative HTML version deleted]]

i need HELPPP!! how do i calculate the RMSE value for two GEV models?first GEV is where the three parameters are constant.2nd GEV model a 4 parameter model with the location parameter is allowed to vary linearly with respect to time while holding the other parameters at constant. is there any programming code for this? i really really need h...

...modelo de series temporales (uso auto.arima). Para ello he implemetado el método "rolling window" que se basa en ir añadiendo progresivamente datos al conjunto de train para testar el modelo. Por ejemplo: - Train: 1 año, test: día 1 (24 observaciones, una por hora) --> evalúo ese día (RMSE por ejemplo) - Train: 1 año + 1 día, test: día 2 --> evalúo ese día (RMSE) - Train: 1 año +  2 días, test: día 3 --> evalúo ese día (RMSE) ... así hasta el final. Después, saco la media y la desviación estándard de la RMSE y considero que esa es la evaluación de mi modelo. La duda es, ¿dónd...

...en, R. C., & Mitchell, J. B. O. (2007). Random Forest Models To Predict Aqueous Solubility. Journal of Chemical Information and Modeling, 47, 150-158. my problem is the following using data(airquality) : the tunning parameters with the lower value is: > print(result.mtry.df[result.mtry.df$RMSE == min(result.mtry.df$RMSE),]) *RMSE = 15.44751 MSE = 238.6257 mtry = 3 nodesize = 5 tree = 35* the numer of tree is very low, different respect how i can read in several pubblications And the second value lower is a tunning parameters with *tree = 1* print(head(result.mtry.df[ with(result.mtry...

...ories https://echange-fichiers.inra.fr/get?k=AcHKdNI4No44GEsj7PK with 12 (global maps)binary files in each.I used the code given below to calculate the spatial correlation between these files and it worked well(the output is a global correlation map). I wonder if there is a simple way to calculate RMSE and bias along with cor.so finally we get three outputs (bias map,RMSE map,cor map) instead of only(cor map). Could anyone tell me how to add the RMSE function written below the code of Corr so that When I run the code.I get both RMSE map,corr map. RMSE function RMSE <- function(obs, sat){...

...l1 col2 col3 col4 col5 050350005 101 56.625 57 RED 051010002 106 50.625 77 GREEN 051190007 25 65.875 51.6 BLUE 051191002 246 52.875 55.070 RED 220050004 55 70 32 BLUE 220150008 75 67.750 32.49 RED for each color (red,green and blue), I need to compare file1 and file2 by making box plot with MB and RMSE for (col4-col3) for file1 and file2 by dividing col2 in different group: if col2<20,20<=col2<50, 50 <= col2 <70, col2 >=70. That is, for the boxplot, the x is (<20, 20-50,50-70, >70), while y is MB (and RMSE) of the difference of col4 and col3 I hope I didn't confuse an...

...= TRUE, pointSize = 5, strokeWidth = 0, color = "darkorange") %>% dySeries("..4",label = "Minor LandMarks", drawPoints = TRUE, pointSize = 1, strokeWidth = 0, color = "darkblue") %>% dyRangeSelector() ###Estimating error with different parameters # RMSE <- vector() # for(i in seq(0.01,0.1,0.01)){ # dat <- get_majorlandmarks(dat,i,0.01) # RMSE[i] <- sqrt(sum((dat$fit-dat$Close)^2)/nrow(dat)) # } # plot(RMSE) [[alternative HTML version deleted]]

...nction(){ .. return() } Model2 <- function(){ ... return() } Model3 <- function(){ ... return() } main <- function(n){ if(n == 1) { Model1() } else if(n == 2){ Model2() } else if(n == 3){ Model3() }} Now I am supposed to automate these models which gives RMSE and MAPE of each model. I would like to provide scores (eg. out of 5) for each model based on the performance. For example, if Arima gives a low RMSE than other models, it will be scored high and the second lowest RMSE model will score a less than Arima and so on. And every time i run those models...

...one is a classification problem. ?am i writing properly the S3 object for svm.formula? This is what I'm trying: TYPE1 mod = svm(train[, 8] ~ . , data= train) pred.svm <- predict (mod, train) error.svm <- train$revenues - pred.svm pred.svm.test <- predict (mod, test) svmPredictionRMSE <- rmse(error.svm) 0.05239259 error.svm.test <- test$revenues - pred.svm.test svmPredictionRMSE.test <- rmse(error.svm.test) 0.06932511 TYPE2 mod.1 = svm(train[, -8] , train[, 8]) pred.1.svm <- predict (mod.1, train[, -8]) error.1.svm <- train$revenues - pred.1.svm rmse(error.1.s...

I have a data set that is comprised of, for simplicity, a vector of numbers that I want to march across in overlapping windows of say 10 values each, computing a couple of values for each window. Is there a vectorized way to do this, or do I truly need to resort to looping--I think so? Any other clever thoughts? Thanks, Sean [[alternative HTML version deleted]]

Hi everyone, Can someone please help me in these questions?: 1)if I use crossvalidation with svm, do I have to use this equation to calculate RMSE?: mymodel <- svm(myformula,data=mydata,cross=10) sqrt(mean(mymodel$MSE)) But if I don’t use crossvalidation, I have to use the following to calculate RMSE: mymodel <- svm(myformula,data=mydata) mytest <- predict(mymodel, mytestdata) error <-...

I would like the text plotted with 'mtext' to be alighned like it is for printing on the console. Here is what I have: > print(emt) ME RMSE MAE MPE MAPE MASE original -1.034568e+07 1.097695e+08 2.433160e+07 -31.30554 37.47713 1.5100050 xreg 1.561235e+01 2.008599e+03 9.089473e+02 267.05490 280.66734 0.9893643 > a <- capture.output(print(emt)) > a [1] "...

...version 2.1.1 on a Linux machine) and then moved it to my computer (R version 2.8.1 on a Windows machine). When I loaded the package and tried to open help for one of the commands, I got the following warning: Warning message: In print.help_files_with_topic("F:/R/R-2.8.1/library/REEMtree/chm/RMSE") : No CHM help for 'RMSE' in package 'REEMtree' is available: the CHM file for the package is missing The resulting Help shows up as a window within R, instead of as the usual HTML help file. Is this occurring because the package was built under an older version of R? Or...

Full_Name: Noel O'Boyle Version: 2.1.0 OS: Debian GNU/Linux Sarge Submission from: (NULL) (131.111.8.96) (1) Description of error The 10-fold CV option for the svm function in e1071 appears to give incorrect results for the rmse. The example code in (3) uses the example regression data in the svm documentation. The rmse for internal prediction is 0.24. It is expected the 10-fold CV rmse should be bigger, but the result obtained using the "cross=10" option is 0.07. When the 10-fold CV is conducted either 'by...