search for: rmarkdown

On 5/3/16 11:29 AM, Thierry Onkelinx wrote: > Dear Mick, > > Note that both knitr and rmarkdown are listed under Suggests: both are > required to compile the vignette. Installing rmarkdown should solve > the problem. If not, please provide more information. OS, R version, > digest version, ... > > This is occurring in the context of an automated testing environment that compar...

Dear List, I am working on moving some Rmarkdown reports into the vignettes folder of a package. While I was able to solve to problem of parametrized reports in vignettes folder thanks to your invaluable help (Thank you), I am now struggling with the following problem. One of the reports which I am moving to vignettes includes the following cod...

...processor was defined in the debugger. Neither work for me. All supporting files are available within the package. The code below should be reproducible on your machine. remove.packages("INBOmd") devtools::install_github("inbo/INBOmd at post_processor") setwd(system.file("rmarkdown/templates/rsos_article/skeleton", package = "INBOmd")) debug(INBOmd::rsos_article) rmarkdown::render("skeleton.Rmd") The sign that post_processor() fails when the tex file still contains \EndFirstPage resulting in the compilation error "Undefined control sequence. l.1...

...pplications/RStudio.app/Contents/MacOS/pandoc/pandoc +RTS -K512m -RTS > skeleton.utf8.md --to latex --from > markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash > --output skeleton.tex --template > /Library/Frameworks/R.framework/Versions/3.3/Resources/library/INBOmd/rmarkdown/templates/rsos_article/resources/template.tex > --natbib --bibliography sample.bib > Latexmk: This is Latexmk, John Collins, 19 Jan. 2017, version: 4.52c. > Error in output_format$post_processor(yaml_front_matter, utf8_input, > output_file, : > unused arguments (yaml_front_matte...

...different warnings: Running vignettes for package ?digest? Running ?sha1.Rmd? Warning messages: 1: In readLines(if (is.character(input2)) { : cannot open file 'sha1.Rmd': No such file or directory 2: In engine$weave(file, quiet = TRUE, encoding = enc) : The vignette engine knitr::rmarkdown is not available, because the rmarkdown package is not installed. Please install it. 3: In readLines(con) : cannot open file 'sha1.Rmd': No such file or directory So why is sha1.Rmd missing? And why is it complaining about rmarkdown? Or more precisely why did it not install it as a de...

...ng examples are source/inbo_rapport and source/inbo_rapport_basic from https://github.com/inbo/inbomd_examples. Note that you need some extra work after installing INBOmd to inbo_rapport() to run. See the README at https://github.com/inbo/INBOmd I've created an issue https://github.com/rstudio/rmarkdown/issues/1138 ir. Thierry Onkelinx Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance Kliniekstraat 25 1070 Anderlecht Belgium To call in the statistician after the experiment is done may be...

...like this: /Applications/RStudio.app/Contents/MacOS/pandoc/pandoc +RTS -K512m -RTS skeleton.utf8.md --to latex --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash --output skeleton.tex --template /Library/Frameworks/R.framework/Versions/3.3/Resources/library/INBOmd/rmarkdown/templates/rsos_article/resources/template.tex --natbib --bibliography sample.bib Latexmk: This is Latexmk, John Collins, 19 Jan. 2017, version: 4.52c. Error in output_format$post_processor(yaml_front_matter, utf8_input, output_file, : unused arguments (yaml_front_matter, utf8_input, output_fi...

On 06/09/2017 5:41 AM, Thierry Onkelinx wrote: > Dear all, > > I'm trying to write a post_processor() for a custom rmarkdown format. The > goal of the post_processor() is to modify the latex file before it is > compiled. For some reason the post_processor() is not run. The > post_processor() does work when I run it manually on the tex file. > > Any suggestions on what I'm doing wrong? Below is the rel...

Buenas noches: Estoy realizando un documento rmarkdown donde realiza un modelo de random forest con la librería H2O, el problema lo tengo cuando lo compilo con knit a pdf, ya que en el documento me sale con rayas con el porcentaje de entrenamiento que lleva. ¿Alguien sabe como eliminarlas para que no aparezca en el documento en pdf? [cid:image001.png...

Buenas noches, Escribo este mail porque tengo un problema con rmarkdown, estoy creando un informe y me iba bien al generarlo como pdf, de repente me sale el siguiente error y no sé como solucionarlo: pandoc.exe: Error producing PDF from TeX sourceError: pandoc document conversion failed with error 43Además: Warning message:comando ejecutado '"C:/Program Files/...

Buenas tardes, Al tratar de hacer en rstudio documentos pdf, word o html con un archivo rmd me sale un mensaje tal que así: "Rendering R Markdown documents requires updated versions of the following packages: knitr, rmarkdown. Do you want to install these packages now?" He probado a reinstalar esos paquetes (que ya tenía instalados) pero cuando vuelvo a aplicar knit to pdf, continua apareciendo dicho mensaje. El sistema es ubuntu 16.04 (lo he instalado recientemente, anteriormente tenía el 14.04). También he p...

On 10/07/2018 11:44 AM, Witold E Wolski wrote: > Dear List, > > I am working on moving some Rmarkdown reports into the vignettes > folder of a package. While I was able to solve to problem of > parametrized reports in vignettes folder thanks to your invaluable > help (Thank you), I am now struggling with the following problem. > > > One of the reports which I am moving to vignet...

Hello, This is a problem I posted about already some time ago: https://stat.ethz.ch/pipermail/r-devel/2018-September/076786.html Finally, I did had some time to create a minimal package to reproduce the problem that vignettes with child can not be build. https://github.com/wolski/RmarkdownVignetteProblem The problem basically is that while all the vignettes can be build by running devtools::build_vignettes or rmarkdown::render they will all fail to build when running devtools::build() or R CMD build except of the ABVignetteWithLocalChild.Rmd for which I did apply the workaround s...

Dear all, I'm trying to write a post_processor() for a custom rmarkdown format. The goal of the post_processor() is to modify the latex file before it is compiled. For some reason the post_processor() is not run. The post_processor() does work when I run it manually on the tex file. Any suggestions on what I'm doing wrong? Below is the relevant snippet of the code...

...rp2Analysis_Empty.Rmd_t" } , did not work? Have a great day, best regards Witek On 10 July 2018 at 19:52, Duncan Murdoch <murdoch.duncan at gmail.com> wrote: > On 10/07/2018 11:44 AM, Witold E Wolski wrote: >> >> Dear List, >> >> I am working on moving some Rmarkdown reports into the vignettes >> folder of a package. While I was able to solve to problem of >> parametrized reports in vignettes folder thanks to your invaluable >> help (Thank you), I am now struggling with the following problem. >> >> >> One of the reports which...

...[1] TRUE BTW, %\VignetteEncoding is not documented anywhere (Cc'ing Kurt), and I think it needs to be documented, since the old approach \usepackage[enc]{inputenc} was basically a hack, which looks really odd in non-LaTeX vignettes (e.g. HTML vignettes). 3. The default `encoding` argument of rmarkdown::render() is not relevant here, even if its value is native.enc. When R build a vignette, it tries to detect its encoding and pass it to the vignette engine, so the default argument value may not be native.enc. Lastly, the most important piece of information is missing in this post: library(rmarkd...

Suppose I have a file (named "tmp.rmd") containing: --- title: Test --- ```{r example, echo=FALSE, results='asis'} tmp <- data.frame(a=1:5, b=letters[1:5]) print( knitr::kable(tmp, row.names=FALSE)) ``` And I render it with: rmarkdown::render('tmp.rmd', output_format=c('html_document','pdf_document')) I get two files: tmp.pdf tmp.html Is there a way to control (change or specify) the font size of the table in the pdf output? (or of the entire document, if it can't be changed for just the table)...

...s Georg > Gesendet: Donnerstag, 08. Juni 2017 um 16:16 Uhr > Von: "Nordlund, Dan (DSHS/RDA)" <NordlDJ at dshs.wa.gov> > An: "MacQueen, Don" <macqueen1 at llnl.gov>, "r-help at r-project.org" <r-help at r-project.org> > Betreff: Re: [R] rmarkdown and font size > > You can change the style, modifying a variety of things. E.g, > > --- > title: Test > --- > > <style type="text/css"> > > body{ /* Normal */ > font-size: 12px; > } > td { /* Table */ > font-size: 8px; >...

Hola, colegas, compañeros y maestros. Es una tontería... que no atino a preguntarsela bien a Google. Tengo unos datos a los que si en consola les digo: > sum(dtk$V9) [1] 37790 devuelve. Pero si eso mismo se lo digo en RMarkdown con código on line, lease `r sum(dtk$V9)` me devuelve un numero horroroso: 3.77910^{4} entre el texto Qué, para colmo, ocupa más carácteres que el que no me imprime. Se que si lo meto entre $ me saldría "bien" la potenciación. Pero no me interesa, yo con un 37790 de toda la vida estoy c...

Hola, cuando ejecuto Rmarkdown los gráficos plotly no salen. No hay ningún error pero en el resultado final no se obtiene nada. Si ejecuto plotly desde R los gráficos primero salen en blanco y es necesario "recargar" para poderlo ver, si lo inspeccionas no sale nada. El equipo en el que me pasa esto es: platform...