search for: rmain

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2019 Feb 27
2
Intermittent crashes with inset `[<-` command
...:6795) ==4711== by 0x4F7D86D: R_compileAndExecute (eval.c:1407) ==4711== by 0x4F7DA70: do_for (eval.c:2185) ==4711== by 0x4F7741C: Rf_eval (eval.c:691) ==4711== by 0x4FA7181: Rf_ReplIteration (main.c:258) ==4711== by 0x4FA7570: R_ReplConsole (main.c:308) ==4711== by 0x4FA760E: run_Rmainloop (main.c:1082) ==4711== by 0x40075A: main (Rmain.c:29) ==4711== Address 0x19b3ab90 is 0 bytes inside a block of size 160,048 free'd ==4711== at 0x4C2ACBD: free (vg_replace_malloc.c:530) ==4711== by 0x4FAFCB2: ReleaseLargeFreeVectors (memory.c:1055) ==4711== by 0x4FAFCB2: RunGenC...
2019 Feb 27
0
Intermittent crashes with inset `[<-` command
...F7D86D: R_compileAndExecute (eval.c:1407) > ==4711== by 0x4F7DA70: do_for (eval.c:2185) > ==4711== by 0x4F7741C: Rf_eval (eval.c:691) > ==4711== by 0x4FA7181: Rf_ReplIteration (main.c:258) > ==4711== by 0x4FA7570: R_ReplConsole (main.c:308) > ==4711== by 0x4FA760E: run_Rmainloop (main.c:1082) > ==4711== by 0x40075A: main (Rmain.c:29) > ==4711== Address 0x19b3ab90 is 0 bytes inside a block of size 160,048 > free'd > ==4711== at 0x4C2ACBD: free (vg_replace_malloc.c:530) > ==4711== by 0x4FAFCB2: ReleaseLargeFreeVectors (memory.c:1055) > ==4...
2012 Jan 20
1
Building R on RHEL 5
...ation.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o?? libs/*o ranlib libR.a gcc -std=gnu99 -Wl,--export-dynamic?? -L/usr/local/lib64 -o R.bin Rmain.o libR.a -L../../lib -lRblas -lgfortran -lm?? -lreadline -lncurses? -lrt -ldl -lm libR.a(main.o): In function `feof_unlocked': /usr/include/bits/stdio.h:123: multiple definition of `feof_unlocked' Rmain.o:/usr/include/bits/stdio.h:123: first defined here libR.a(main.o): In function `ferror_...
2006 Apr 03
2
Build failure with this morning's R-alpha
...ng directory `/tmp/buildd/r-base-2.2.1.svn37626/src/main' make[4]: Leaving directory `/tmp/buildd/r-base-2.2.1.svn37626/src/main' make[4]: Entering directory `/tmp/buildd/r-base-2.2.1.svn37626/src/main' gcc -I. -I../../src/include -I../../src/include -DHAVE_CONFIG_H -fpic -O2 -c Rmain.c -o Rmain.o gcc -Wl,--export-dynamic -o R.bin Rmain.o -L../../lib -lR ../../lib/libR.so: undefined reference to `isfinite' collect2: ld returned 1 exit status make[4]: *** [R.bin] Error 1 make[4]: Leaving directory `/tmp/buildd/r-base-2.2.1.svn37626/src/main' make[3]: *** [R] Error 2 mak...
2019 Feb 26
8
Intermittent crashes with inset `[<-` command
The following code crashes after about 300 iterations on my?x86_64-w64-mingw32?machine on R 3.5.2 --vanilla.?? Others have duplicated this (see?https://github.com/tidyverse/magrittr/issues/190?if necessary), but I don't know how machine/OS-dependent it may be.?? If it doesn't crash for you, please try increasing the length of the x vector. Substituting the commented-out line for the one
2009 Nov 03
1
memory misuse in subscript code when rep() is called in odd way
...26459== by 0x80C7368: do_subset_dflt (subset.c:158) ==26459== by 0x80B4283: do_rep (Rinlinedfuns.h:161) ==26459== by 0x816491B: Rf_eval (eval.c:464) ==26459== by 0x805A726: Rf_ReplIteration (main.c:262) ==26459== by 0x805A95E: R_ReplConsole (main.c:311) ==26459== by 0x805AFBC: run_Rmainloop (main.c:964) ==26459== by 0x8058E2B: main (Rmain.c:33) ==26459== ==26459== Conditional jump or move depends on uninitialised value(s) ==26459== at 0x80C5567: integerSubscript (subscript.c:409) ==26459== by 0x80C5EDC: Rf_vectorSubscript (subscript.c:658) ==26459== by 0x80C5FFD: Rf_ma...
2008 Jun 30
1
AIX 5.3 --enable-R-shlib make error with R-2.7.1
...3]: Entering directory `/home/apps/crm_cm/n731661x/src/R-2.7.1/src/main' gcc -maix64 -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I//users/apps/crm_cm/n731661x/usr/include -DHAVE_CONFIG_H -mminimal-toc -g -O3 -c Rmain.c -o Rmain.o gcc -maix64 -std=gnu99 -Wl,-brtl -Wl,-bexpall -Wl,-bpT:0x100000000 -Wl,-bpD:0x110000000 -lc -L//users/apps/crm_cm/n731661x/usr/local/lib/ppc64 -L//users/apps/crm_cm/n731661x/usr/local/lib -o R.bin Rmain.o -L../../lib -lR ld: 0711-317 ERROR: Undefined symbol: R_running_as_main_program l...
2006 Feb 26
0
R2.2.1 source compile problem in MacOS10.3
...re gcc 3.3 and g77 3.4. ./configure is fine Here are the errors I got from make: >make ... gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -no-cpp-precomp -I. -I../../src/include -I../../src/include -I/sw/include -I/usr/local/include -DHAVE_CONFIG_H -g -O2 -c Rmain.c -o Rmain.o gcc -mdynamic-no-pic -L/sw/lib -L/usr/local/lib -o R.bin Rmain.o -L../../lib -lR ld: warning multiple definitions of symbol _signgam ../../lib/libR.dylib(lgamma.lo) definition of _signgam /usr/lib/libSystem.dylib(gamma9.o) definition of _signgam ld: /usr/lib/gcc/darwin/3.3/libgcc.a(...
2012 May 15
1
R-devel on FreeBSD: new C99 functions don't build
...e this: [..snip..] mkdir /usr/ports/math/R-devel/work/R-devel/bin/exec gcc46 -std=gnu99 -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -O2 -fno-strict-aliasing -pipe -msse3 -Wl,-rpath=/usr/local/lib/gcc46 -c Rmain.c -o Rmain.o gcc46 -std=gnu99 -export-dynamic -fopenmp -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc46 -o R.bin Rmain.o -L../../lib -lR -lRblas ../../lib/libR.so: undefined reference to `log1pl' collect2: ld returned 1 exit status *** [R.bin] Error code 1 Stop in /usr/ports/math/R-devel/work/...
2007 Nov 26
2
Problem installing R on Solaris 9
I've downloaded R-2.6.0 I want to install it on Solaris, so, I run the configure command, it to be fine, but once I run make it give me the following error: *ld: fatal : fichier Rmain.o : type de machine ELF erronV : EM_386 ld: fatal : Erreurs dans le traitement des fichiers. Aucun rVsultat n'a VtV Vcr it dans R.bin collect2: ld returned 1 exit status *** Error code 1 make: Fatal error: Command failed for target `R.bin' Current working directory /rgui-original/R-2.6.0/s...
2008 Nov 04
2
Building with MKL on Ubuntu
Hi all, I'm trying to build R from subversion with MKL 10.0.2 on Ubuntu. I tried: ./configure --with-blas='-L/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl -lguide' --with-lapack='/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl -lmkl_lapack' --enable-R-shlib and got: R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /usr/local
2008 Nov 04
2
Building with MKL on Ubuntu
Hi all, I'm trying to build R from subversion with MKL 10.0.2 on Ubuntu. I tried: ./configure --with-blas='-L/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl -lguide' --with-lapack='/opt/intel/mkl/10.0.2.018/lib/em64t -lmkl -lmkl_lapack' --enable-R-shlib and got: R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /usr/local
2005 Mar 17
3
Compiling "R Embedded" examples
Hi, This question was first posted wrongly on R-help. Apologize for the inconvenience. I am working at a major financial institution and we would like to embed R in one of our front office application. The application is written in C/C++ so I started by trying to compile the examples in "tests/Embedding" of R 2.0.1. I have modified "tests/Embedding/Makefile" according to
2002 Apr 25
1
An unexpected exception has been detected in native code outside the VM
...rst time,but the error message "An unexpected exception has been detected in native code outside the VM. " will appear. What is the issue of "native code"? Could somebody help me ? Thanks, ken This is the log I obtained: executing: source('/export/home/users/ruser/java/Rmain.R') Loading RInterpreter library R : Copyright 2002, The R Development Core Team Version 1.4.1 (2002-01-30) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type `license()' or `licence()' for distribution details....
2010 Jan 04
1
bin/exec/R coredumps (PR#14177)
...[1] strlen(0x0, 0x0, 0xffff, 0x0, 0xffff, 0x3), at 0xfffffd7fff21fb50 =>[2] Rf_initialize_R(ac = ???, av = ???) (optimized), at 0xfffffd7fef252eb0 (line ~331) in "system.c" [3] main(ac = ???, av = ???) (optimized), at 0x400e0a (line ~32) in "Rmain.c" dbx<2>
2013 Aug 19
1
Issues in installing R-devel
...rio R]$ svn co http://svn.r-project.org/R/trunk [atxi@aquario R]$ cd trunk [atxi@aquario R]$ ./tools/rsync-recommended [atxi@aquario R]$ ./configure --enable-R-shlib [atxi@aquario R]$ make I'm getting the following error: gcc -std=gnu99 -Wl,--export-dynamic -fopenmp -L/usr/local/lib -o R.bin Rmain.o -L../../lib -lR -lRblas ../../lib/libR.so: undefined reference to `SHORT_VEC_LENGTH' collect2: ld returned 1 exit status This does not seem to be a missing dependency, as the complaint is about something included in the R code. I had previously successfully installed R-devel using the exac...
2013 May 25
0
segfault when using browser() in Rprofile.site
...(main.c:222) ==31314== by 0x4D4047: R_ReplConsole (main.c:307) ==31314== by 0x4D4353: do_browser (main.c:1137) ==31314== by 0x4B1E86: Rf_eval (eval.c:639) ==31314== by 0x4D22F0: R_ReplFile (main.c:101) ==31314== by 0x4D23FF: R_LoadProfile (main.c:663) ==31314== by 0x4D2965: setup_Rmainloop (main.c:892) ==31314== by 0x4D4558: Rf_mainloop (main.c:992) ==31314== by 0x41A4D7: main (Rmain.c:32) ==31314== Address 0x0 is not stack'd, malloc'd or (recently) free'd ==31314== *** caught segfault *** address (nil), cause 'memory not mapped' And here is the gdb...
2007 Jan 30
1
Solaris 10 compilation issue
.../include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -xO5 -xlibmil -xc99=%all -xlibmieee -c mkdtemp.c -o mkdtemp.o /opt/SUNWspro/bin/cc -xarch=amd64 -L/usr/local/lib/64 -L/usr/sfw/lib/64 -L/lib/amd64 -R/usr/local/lib/64 -R/usr/sfw/lib/64 -R/lib/amd64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o eng...
2007 Jan 30
1
Difficulty with compiling R-2.4.1 on solaris 10
..../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -xO5 -xlibmil -xc99=%all -xlibmieee -c mkdtemp.c -o mkdtemp.o /opt/SUNWspro/bin/cc -xarch=amd64 -L/usr/local/lib/64 -L/usr/sfw/lib/64 -L/lib/amd64 -R/usr/local/lib/64 -R/usr/sfw/lib/64 -R/lib/amd64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine....
2017 Aug 23
2
No rule to make target all.R, needed by compiler.rdb building R 3.4.1 from source, Scientific Linux release 6.9 (Carbon)
....1/src/main' gcc -I../../src/extra -I. -I../../src/include -I../../src/include -I/usr/local/packages6/libs/gcc/4.4.7/curl/7.47.1/include -I/usr/local/packages6/compilers/gcc/5.4.0/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -I/usr/local/packages6/compilers/gcc/5.4.0/include -c Rmain.c -o Rmain.o gcc -Wl,--export-dynamic -fopenmp -L../../lib -L/usr/local/lib/gcc/blas/1 -L/usr/local/lib/gcc/lapack/3.3.0 -L/usr/local/packages6/libs/gcc/4.4.7/bzip2/1.0.6/lib/ -o R.bin Rmain.o -lR -lRblas ../../lib/libR.so: undefined reference to `pcre_assign_jit_stack' ../../lib/libR.so: und...