search for: rglue

...config.status: creating src/config.h ** libs gcc -m64 -std=gnu99 -I/usr/include/R -I. -I/opt/jre1.6.0_22/include -I/opt/jre1.6.0_22/include/linux -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c Rglue.c -o Rglue.o In file included from Rglue.c:2: rJava.h:19:17: error: jni.h: No such file or directory In file included from Rglue.c:2: rJava.h:120: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?*? token rJava.h:122: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?...

...s: creating R/zzz.R config.status: creating src/config.h ** libs gcc -std=gnu99 -I/home/mkimpel/R_HOME/R-2.9.1/R-build/lib64/R/include -I. -I/usr/lib/jvm/java-1.5.0-gcj-4.3-1.5.0.0/jre/../include -I/usr/lib/jvm/java-1.5.0-gcj-4.3-1.5.0.0/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c Rglue.c -o Rglue.o In file included from Rglue.c:2: rJava.h:17:17: error: jni.h: No such file or directory In file included from Rglue.c:2: rJava.h:115: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?*? token rJava.h:117: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?*?...

...creating src/Makefile config.status: creating Makefile config.status: creating run config.status: creating src/config.h ** libs gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I. -I/usr/local/Java/jre/../include -I/usr/local/Java/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c Rglue.c -o Rglue.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I. -I/usr/local/Java/jre/../include -I/usr/local/Java/jre/../include/linux -I/usr/local/include -fpic -g -O2 -c arrayc.c -o arrayc.o gcc -std=gnu99 -I/usr/local/lib64/R/include -DNDEBUG -I. -I/usr/local/Java/jre/../include -I/u...

...cal/lib/R/include -I/usr/local/include -I/usr/local/java/current/include -I/usr/local/java/current/include/linux -fPIC -g -O2 -c initJNI.c -o initJNI.o gcc -I/usr/local/lib/R/include -I/usr/local/include -I/usr/local/java/current/include -I/usr/local/java/current/include/linux -fPIC -g -O2 -c Rglue.c -o Rglue.o gcc -I/usr/local/lib/R/include -I/usr/local/include -I/usr/local/java/current/include -I/usr/local/java/current/include/linux -fPIC -g -O2 -c rJava.c -o rJava.o gcc -shared -L/usr/local/lib -o rJava.so callJNI.o initJNI.o Rglue.o rJava.o -L -ljvm -L/usr/local/lib/R/lib -lR ** R **...

...en trying to install rJava both from inside R via install.packages(rJava) or R CMD INSTALL myrJava.tar.gz I get the same error lines: ============================================================================================================== gcc44 -std=gnu99 -shared -L/usr/local/lib -o rJava.so Rglue.o arrayc.o callJNI.o callback.o fields.o init.o jri_glue.o loader.o otables.o rJava.o tools.o -L/usr/local/jdk1.6.0/jre/lib/i386/server -L/usr/local/jdk1.6.0/jre/lib/i386 -L/usr/local/jdk1.6.0/jre/../lib/i386 -L -L/usr/java/packages/lib/i386 -L/lib -L/usr/lib -L/usr/local/lib -ljvm -pthread -L/usr/...

...: creating Makefile config.status: creating run config.status: creating src/config.h ** libs gcc46 -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/local/jdk1.6.0/jre/../include -I/usr/local/jdk1.6.0/jre/../include/freebsd -fpic -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -c Rglue.c -o Rglue.o gcc46 -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/local/jdk1.6.0/jre/../include -I/usr/local/jdk1.6.0/jre/../include/freebsd -fpic -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing -c arrayc.c -o arrayc.o gcc46 -std=gnu99 -I/usr/local/lib/R/include -I. -I/usr/loc...

...e: creating ./config.status config.status: creating src/Makefile config.status: creating Makefile config.status: creating run config.status: creating src/config.h ** libs gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include -fpic -O2 -pipe -g -c Rglue.c -o Rglue.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include -fpic -O2 -pipe -g -c arrayc.c -o arrayc.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include -fpic -O2 -pipe -g -c callJNI...

..._11/jre/../include -I/usr/local/jdk1.5.0_11/jre/../include/linux -fpic -O3 -g -std=gnu99 -c jri_glue.c -o jri_glue.o gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include -I/usr/local/jdk1.5.0_11/jre/../include -I/usr/local/jdk1.5.0_11/jre/../include/linux -fpic -O3 -g -std=gnu99 -c Rglue.c -o Rglue.o gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include -I/usr/local/jdk1.5.0_11/jre/../include -I/usr/local/jdk1.5.0_11/jre/../include/linux -fpic -O3 -g -std=gnu99 -c rJava.c -o rJava.o gcc -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o rJava.so callback.o callJNI.o jri_g...