Displaying 8 results from an estimated 8 matches for "rfc2".
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2008 Jun 16
2
Creating a Hash from Data.Frame
Hi,
I have the following data frame:
> print(mydatframe)
__DATAFRAME__
V1 V2 V3
1 1007_s_at DDR1 discoidin domain receptor tyrosine kinase 1
2 1053_at RFC2 replication factor C (activator 1) 2, 40kDa
3 117_at HSPA6 heat shock 70kDa protein 6 (HSP70B')
__END__
Is there a way to create a hash with
V2 as Key and V3 as its value?
- Gundala Viswanath
Jakarta - Indonesia
2009 Jun 18
2
Any method to speed up this problem?
Hi all,
Suppose I have a vector like this:
[1] "STAT1" "STAT1" "STAT1" "STAT1" "GAPDH" "GAPDH" "GAPDH" "ACTB"
"ACTB"
[10] "ACTB" "DDR1" "RFC2" "HSPA6" "PAX8" "GUCA1A" "UBE1L" "THRA"
"PTPN21"
[19] "CCL5" "CYP2E1" "STAT1" "THRA" "PAX8"
I would like to produce a vector such that it has the same length as the one
a...
2008 Jun 16
1
Separator with " | " for read.table
Hi,
I have the following data file to be parsed and captured as a data frame:
__DATA__
#GDS_ID GENE_NAME GENE_DESCRIPTION GENE_FUNCTION
1007_s_at | DDR1 | discoidin domain receptor tyrosine kinase 1 | protein-coding
1053_at | RFC2 | replication factor C (activator 1) 2, 40kDa | protein-coding
117_at | HSPA6 | heat shock 70kDa protein 6 (HSP70B') | protein-coding
__END__
In particular it is separated by " | " , namely - space, bar, space.
However I tried this without avail:
geneinfo <- read.table("myd...
2008 Jun 24
1
Binding result of a function to a data frame
...kurtosis <-function(x) (mean((x-mean(x))^4))/(sd(x)^4) #x is a vector
and data
> print(mydata)
V1 V2 V3 V4 V5
1 1007_s_at DDR1 2865.1 2901.3 1978.3
2 1053_at RFC2 103.6 81.6 108.0
3 117_at HSPA6 222.0 222.5 306.2
4 121_at PAX8 2146.3 2457.2 1901.9
5 1255_g_at GUCA1A 226.5 321.2 109.2
6 1294_at UBE1L 296.6...
2010 Apr 29
1
merged files
...0 0 ATMIN 23300 4 16 +
79636596 79636655 10 A_23_P100141 0 0 UNKL 64718 12 16 - 1355346 1355287
*merged.txt (Should look like this)*
GeneSymbol GeneID Exons Chrome AffyMatrixProbeID AffyStart AffyEnd
AgilentProbeID AgilentStart AgilentEnd DDR1 780 21 6 A_24_P123601
30975848 30975907 RFC2 5982 10 7 1053_at:120:925,
1053_at:504:41,
1053_at:522:871,
1053_at:828:1025,
203696_s_at:291:651 73287845,
73287869,
73287863,
73287881,
73287850 73287821,
73287845,
73287839,
73287857,
73287826 A_23_P93823 73287861 73287802 RFC2 5982 11 7 HSPA6 3310
1 1 A_23_P114903 159762782 15...
2010 Apr 29
0
merge on criteria
...0 0 ATMIN 23300 4 16 +
79636596 79636655 10 A_23_P100141 0 0 UNKL 64718 12 16 - 1355346 1355287
*merged.txt (Should look like this)*
GeneSymbol GeneID Exons Chrome AffyMatrixProbeID AffyStart AffyEnd
AgilentProbeID AgilentStart AgilentEnd DDR1 780 21 6 A_24_P123601
30975848 30975907 RFC2 5982 10 7 1053_at:120:925,
1053_at:504:41,
1053_at:522:871,
1053_at:828:1025,
203696_s_at:291:651 73287845,
73287869,
73287863,
73287881,
73287850 73287821,
73287845,
73287839,
73287857,
73287826 A_23_P93823 73287861 73287802 RFC2 5982 11 7 HSPA6 3310
1 1 A_23_P114903 159762782 15...
2008 May 30
1
A question about *read.table()*
...read in a similar txt file which
consists of 22277 rows, 72 columns.
> exprSet <- read.table('70mel_GSA.txt', row.names = 1,header =FALSE)
> dim(exprSet)
[1] 22277 71
> exprSet[1:4,1:4]
V2 V3 V4 V5
GENE1 DDR1 10.215229 8.546666 9.207030
GENE2 RFC2 8.028489 8.175520 9.090902
GENE3 HSPA6 4.633769 4.822625 5.125172
GENE4 PAX8 6.121433 6.396281 6.000987
The two txt files are of similar format. The only difference so far I can
tell is that
the second file is of more rows and columns. Other than that, they are
basically
the same. But I don...
2012 Aug 27
2
Font size in geom_dl (using ggplot2)
Hey everyone,
I am an R-newby... so sorry for bothering you with simple-to-solve
questions;) I have the following issue: trying to add labels to my
scatterplots (with geom_dl in ggplot2). Everything works fine, but after
checking every resource I do not find a way to change the font size of my
labels. I tried size, cex, fontsize at every position... but it always stays
the same.
ggplot()+