search for: rf_setattrib

...0x7fff7a56d770 T0) ==11608==The signal is caused by a READ memory access. ==11608==Hint: address points to the zero page. #0 0x5cc478 in Rf_isVector R-3.5.0/src/main/../../src/include/Rinlinedfuns.h:857:12 #1 0x5cc478 in Rf_dimnamesgets R-3.5.0/src/main/attrib.c:1099 #2 0x5c4f72 in Rf_setAttrib R-3.5.0/src/main/attrib.c:259:9 #3 0x5db48d in do_attributesgets R-3.5.0/src/main/attrib.c:1373:6 #4 0x84b939 in bcEval R-3.5.0/src/main/eval.c:7082:12 #5 0x8171df in Rf_eval R-3.5.0/src/main/eval.c:624:8 #6 0x8669a2 in R_execClosure R-3.5.0/src/main/eval.c #7 0x817d7f in R...

...ta->ans_nms = Rf_allocVector(STRSXP, efldNR )); for( ix = 0; ix < efldNR; ix++ ) SET_STRING_ELT(mydata->ans_nms, ix, mkChar(vnames[ix])); // later I bind values of non-R variables from my data structure to a proper vector PROTECT(mydata->ans = Rf_allocVector(VECSXP, efldNR )); Rf_setAttrib(mydata->ans, R_NamesSymbol, mytraj->ans_nms); SET_VECTOR_ELT(mydata->ans, 0, mydata->R_a ); SET_VECTOR_ELT(mydata->ans, 1, mydata->R_b ); ... // all protects get unprotected before return // finalizer is registered as well return Rdata; Later on in read_my_data() I...

...9370== by 0x4C22DC3: Rf_cons (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4C23AE1: Rf_allocList (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4B6926B: installAttrib (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4B69961: Rf_classgets (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4B68DC1: Rf_setAttrib (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4B69A40: do_classgets (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4BE908E: Rf_eval (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4BEB6FD: applydefine (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4BEBAE3: do_set (in /usr/lib64/R/lib/libR.so)...

...ce to `Rf_allocVector(unsigned, int)' test.a(test.o.b)(.text+0xda):test.cpp: undefined reference to `Rf_protect(SEXPREC*)' test.a(test.o.b)(.text+0xf5):test.cpp: undefined reference to `Rf_getAttrib(SEXPREC*, SEXPREC*)' test.a(test.o.b)(.text+0x107):test.cpp: undefined reference to `Rf_setAttrib(SEXPREC*, SEXPREC*, SEXPREC*)' test.a(test.o.b)(.text+0x113):test.cpp: undefined reference to `Rf_unprotect(int)' test.a(test.o.b)(.text+0x129):test.cpp: undefined reference to `VECTOR_ELT(SEXPREC*, int)' test.a(test.o.b)(.text+0x132):test.cpp: undefined reference to `SETCADR(SEXPREC...

...otentially setting a list of NULLs as the dimnames of an object, so having dimnames<- do the collapse would fix the problem in one place once for all and avoid a lot of repeated code. Finally, having this functionality available at the C level would be great. Would basically be a wrapper to Rf_setAttrib(x, R_DimNamesSymbol, dimnames) that takes care of the collapse. The SET_DIMNAMES macro could be redefined to call that wrapper instead... Thanks, H. -- Herv? Pag?s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M...

...(./lapack.so) undefined symbol: Rf_asLogical (./lapack.so) undefined symbol: COMPLEX (./lapack.so) undefined symbol: Rf_unprotect (./lapack.so) undefined symbol: REAL (./lapack.so) undefined symbol: INTEGER (./lapack.so) undefined symbol: Rf_error (./lapack.so) undefined symbol: Rf_setAttrib (./lapack.so) undefined symbol: Rf_getAttrib (./lapack.so) undefined symbol: lsame_ (./lapack.so) Looks like all the libraries it needs are there, but why can't it find those undefined symbols? Any help is greatly appreciated! Regards, Andy -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-...

...(./lapack.so) undefined symbol: Rf_asLogical (./lapack.so) undefined symbol: COMPLEX (./lapack.so) undefined symbol: Rf_unprotect (./lapack.so) undefined symbol: REAL (./lapack.so) undefined symbol: INTEGER (./lapack.so) undefined symbol: Rf_error (./lapack.so) undefined symbol: Rf_setAttrib (./lapack.so) undefined symbol: Rf_getAttrib (./lapack.so) undefined symbol: lsame_ (./lapack.so) Looks like all the libraries it needs are there, but why can't it find those undefined symbols? Any help is greatly appreciated! Regards, Andy -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-...

...ld: 0711-317 ERROR: Undefined symbol: .Rf_errorcall ld: 0711-317 ERROR: Undefined symbol: .Rf_protect ld: 0711-317 ERROR: Undefined symbol: .Rf_str2type ld: 0711-317 ERROR: Undefined symbol: .Rf_begincontext ld: 0711-317 ERROR: Undefined symbol: .Rf_endcontext ld: 0711-317 ERROR: Undefined symbol: .Rf_setAttrib ld: 0711-317 ERROR: Undefined symbol: .Rf_unprotect ld: 0711-317 ERROR: Undefined symbol: .R_setX11Routines ld: 0711-317 ERROR: Undefined symbol: .vmaxget ld: 0711-317 ERROR: Undefined symbol: .Rf_asReal ld: 0711-317 ERROR: Undefined symbol: .Rf_isValidString ld: 0711-317 ERROR: Undefined symbol: ....

I just downloaded R-devel and when loaded it immediately segfaults. I'm not sure how much or what sort of diagnostic info and can provide, but below is my build script, my console output, and the output of uname -r. I am currently dependent on the development version of a package, so I'd like to get R-devel up and running if possible. I am sure there is more info I can provide, but before

...Rf_error U Rf_eval U Rf_getAttrib U Rf_install U Rf_length U Rf_mkChar U Rf_mkCharCE U Rf_mkCharLen U Rf_mkString U Rf_protect U Rf_setAttrib U Rf_unprotect U Rf_warning U SETCAR U SET_STRING_ELT U SET_VECTOR_ELT U STRING_ELT U TYPEOF U VECTOR_ELT 0000000000208040 d VersionInfoFieldNames 00000000002080c0...

...Rf_error U Rf_eval U Rf_getAttrib U Rf_install U Rf_length U Rf_mkChar U Rf_mkCharCE U Rf_mkCharLen U Rf_mkString U Rf_protect U Rf_setAttrib U Rf_unprotect U Rf_warning U SETCAR U SET_STRING_ELT U SET_VECTOR_ELT U STRING_ELT U TYPEOF U VECTOR_ELT 0000000000208040 d VersionInfoFieldNames 00000000002080c0...

...s.o)(.text+0x203):nls.c: undefined reference to `Rf_asLogical' nls.a(nls.o)(.text+0x20f):nls.c: undefined reference to `Rf_isNewList' nls.a(nls.o)(.text+0x223):nls.c: undefined reference to `Rf_error' ... (many lines deleted) nls.a(nls.o)(.text+0xb52):nls.c: undefined reference to `Rf_setAttrib' nls.a(nls.o)(.text+0xb5c):nls.c: undefined reference to `Rf_unprotect' make[2]: *** [nls.dll] Error 1 make[2]: Leaving directory `/usr/src/r-devel/src/library/nls/src' make[1]: *** [src/nls.dll] Error 2 make[1]: Leaving directory `/usr/src/r-devel/src/library/nls' make: *** [...

Hi R-devel, I'm trying to get R 3.2.1 working on Haiku (an open source OS inspired by BeOS, not Linux based) on i586. With a few small changes to library paths and ifdefs I am able to get a seemingly working R binary. The build process stops with the 'tools' package. The last lines from make are below. Does anyone have any tips? I'm rather new to debugging at this low level. Are

...for -lfor -lFutil -lots -lm_c32 -lmld -lexc -lreadline -ltermcap -lm ld: Warning: Unresolved: R_NaInt Rf_error R_alloc R_NilValue R_DimSymbol R_NamesSymbol Rf_coerceVector Rf_allocMatrix Rf_allocVector Rf_asLogical Rf_duplicate Rf_getAttrib Rf_isComplex Rf_isMatrix Rf_isString Rf_mkChar Rf_protect Rf_setAttrib Rf_unprotect Rf_unprotect_ptr LENGTH R_CHAR STRING_ELT SET_STRING_ELT VECTOR_ELT SET_VECTOR_ELT INTEGER REAL COMPLEX R_setLapackRoutines xerbla_ dswap_ dscal_ drot_ lsame_ idamax_ dgemm_ dcopy_ dnrm2_ dgemv_ dasum_ dtrmv_ daxpy_ ddot_ dger_ dtrmm_ dsymv_ dtrsv_ dsyr2_ dsyr2k_ gmake[5]: Entering dir...