search for: rcheck

Displaying 20 results from an estimated 61 matches for "rcheck".

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2002 Jan 30
5
1.4.1 R CMD check broken?
...references to similar behavior when R_HOME is set? Here is what I get: (1) Fresh build of 1.4.1 under Linux/RH-7.2. All tests pass. > R CMD check ctest * checking for working latex ... OK * using log directory `/home/andyj/stat/R-1.4.1/library/ctest.Rcheck'' Installing *source* package `ctest'' ... R help >>> Building/Updating help pages for package `ctest'' Formats: text html latex example At this point R hangs. (2) Just installed 1.4.1 on Win200 using Prof. Ripley single fil...
2013 May 21
2
Re: R CMD check: unknown option ?--outdir==RCHECK?
...version ''--outdir'' is not recognised: For `R CMD check --outdir=mydir pkg_0.1.tar.gz` we get: Warning: unknown option ‘--outdir=mydir’ But with `R CMD check -o mydir pkg_0.1.tar.gz` we get: * using log directory ‘/home/renaud/Documents/projects/mydir/pkg.Rcheck’ ... which works perfectly fine, and puts pkg.Rcheck in ''mydir''. Renaud [[alternative HTML version deleted]]
2003 Sep 09
2
Making R packages (Unix)
Hi: I have have taken over from a colleague who prepared an R package and failed to build it on Windows. I am doing this with unix as I am a mac user. Below is the output I get when I use the build command: [gattuso:unix/R/CO2.Rcheck] gattuso% R CMD build CO2 * checking for file ''CO2/DESCRIPTION'' ... OK * preparing ''CO2'': * checking whether ''INDEX'' is up-to-date ... NO * use ''--force'' to overwrite the existing ''INDEX'' * removing junk f...
2013 Mar 11
1
"undefined symbol" when `R CMD check'.
...7;2.15/Rcpp/lib -lRcpp -Wl,-rpath,/home/gogamza/R/x86_64- pc-linux-gnu-library/2.15/Rcpp/lib -L/usr/local/lib -L/usr/lib/ -lstdc++ -luchardet -L/usr/lib/R/lib -lR installing to /home/gogamza/work/Ruchardet.Rcheck/Ruchardet/libs ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object ''/home/gogamza/work...
2009 Apr 24
3
Error building package: LaTeX error when creating PDF version
...ings in source and make files * checking for empty or unneeded directories * building ''GLMsData_0.7.tar.gz'' pdunn2 at PDunnUbuntu:~/DSdata$ R CMD check GLMsData * checking for working pdflatex ... OK * using log directory ''/home/pdunn2/DSdata/GLMsData.Rcheck'' * using R version 2.9.0 (2009-04-17) <SNIP: No errors or warnings in sniped bit; everything is OK> * checking data for non-ASCII characters ... OK * checking examples ... OK * checking PDF version of manual ... WARNING LaTeX errors when creating PDF version. This typically indica...
2013 Jul 18
10
question about Makeconf and nvcc/CUDA
...e dyn.load command, but when I use the is.loaded function, it shows FALSE. Here are the results of the check command: c:\PROGRA~1\R\R-3.0.1\bin\i386>R CMD check cudasize R CMD check cudasize * using log directory ''c:/PROGRA~1/R/R-3.0.1/bin/i386/cudasize.Rcheck'' * using R version 3.0.1 (2013-05-16) * using platform: i386-w64-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file ''cudasize/DESCRIPTION'' ... OK * checking extension type ... Package * this is package ''cudasize'' version '...
2013 Apr 04
3
R CMD check --outdir=path gives unknown option '--outdir'
...39; is not recognized and generates warning "unknown option ''--outdir''". R CMD check --help says: Usage: R CMD check [options] pkgs [...] Options: [...] -o, --outdir=DIR directory used for logfiles, R output, etc. (default is ''pkg.Rcheck'' in current directory, where ''pkg'' is the name of the package checked) Example: mkdir foo # Check output is written to foo/ R CMD check -o foo pkg_0.1.tar.gz # Option is ignored and check output is written to bar.Rcheck/ R CMD check --o...
2012 Apr 30
0
R CMD check . segfault on re-building vignettes
...aborting ... Segmentation fault (core dumped) as one can see, the error stems from the call file.copy(pkgdir, vd2, recursive = TRUE) in the run_vignettes function defined in the tools:::.check_packages function. this call will copy the contents of "pkgdir" (the source directory) to the ..Rcheck/vign_test/ directory _recursively_, the problem of which being that the "..Rcheck" directory is part of "pkgdir". Thus we get into a loop of copying pkgdir into pkgdir/..Rcheck/vign_test, which is interrupted at some point by a segfault (at least on my x86_64 GNU...
2013 Mar 07
1
Fwd: mistake on Securing SSH
...l.com> Cc: Hi TImothy, I saw wiki http://wiki.centos.org/HowTos/Network/SecuringSSH and it is pretty good, but there is a mistake. *Instead of having* iptables -A INPUT -p tcp --dport 22 -m recent --set --name ssh --rsource iptables -A INPUT -p tcp --dport 22 -m recent ! --rcheck --seconds 60 --hitcount 4 --name ssh --rsource -j ACCEPT *You should have* iptables -A INPUT -p tcp --dport 22 *-m state --state NEW* -m recent --set --name ssh --rsource iptables -A INPUT -p tcp --dport 22 *-m state --state NEW* -m recent ! --rcheck --seconds 60 --hitcount 4 --name ssh --rsource...
2012 Oct 18
2
R CMD check --force-biarch
...gt; Error: .onLoad failed in loadNamespace() for ''RNetica'', details: > Call: library.dynam("RNetica",pkgname, libname) > Error: DLL ''RNetica'' not found: maybe not installed for this architecture? Sure enough, if I check the directory RNetica.Rcheck/RNetica/libs/x64 It has Netica.dll, RNetica.dll, and symbols.rds If I check the directory RNetica.Rcheck/RNetica/libs/i386 It only has Netica.dll (copied there by the configure.win). If I run R CMD check RNetica --no-multiarch, this test runs correctly. If I run R CMD check...
2017 Aug 11
1
package building problem Centos 7 & R 3.4.1
...'t survive check either. Hopefully this makes it easy for you to replicate (copy/paste :) ) $ wget http://rweb.quant.ku.edu/cran/src/contrib/reproducer_0.1.9.tar.gz $ R CMD check --as-cran reproducer_0.1.9.tar.gz * using log directory ?/tmp/pj/reproducer.Rcheck? * using R version 3.4.1 (2017-06-30) * using platform: x86_64-redhat-linux-gnu (64-bit) * using session charset: UTF-8 * using option ?--as-cran? * checking for file ?reproducer/DESCRIPTION? ... OK * this is package ?reproducer? version ?0.1.9? * checking CRAN incoming feasibility ... WARNING...
2007 Sep 20
5
warnings although R CMD check runs without any problem
Dear list members, as I am new to R, I would kindly like to ask for your help. I checked a package with the ''R CMD check'' command and all worked out well, (only ''OK'' status). Loading its vignette afterwards with ''source("package.Rcheck/inst/doc/vignette.R")'' yields a message saying that several (well, in my case more than 50) warnings still exist and can be viewed via the ''warnings()'' command. My question now is: why are there still warnings even though the check has been passed withou...
2003 Dec 23
1
Rd.sty not found -
...ofessional with R 1.8.1). I have made some progress - and now at least Rcmd check works - it still giving me an error message when it creates latex help files though. Thus I get: c:\rpack> Rcmd check test * checking for working latex ... OK * using log directory ''C:/rpacks/test.Rcheck'' * checking for file ''test/DESCRIPTION'' ... OK * checking if this is a source package ... OK ---------- Making package test ------------ adding build stamp to DESCRIPTION installing R files installing man source files installing indices installing help &gt...
2012 Apr 30
0
file.copy(src, src, recursive=TRUE) causes a segfault (Was: Re: R CMD check . segfault on re-building vignettes)
...lt (core dumped) > > as one can see, the error stems from the call > file.copy(pkgdir, vd2, recursive = TRUE) > in the run_vignettes function defined in the tools:::.check_packages > function. this call will copy the contents of "pkgdir" (the source > directory) to the ..Rcheck/vign_test/ directory _recursively_, the > problem of which being that the "..Rcheck" directory is part of > "pkgdir". Thus we get into a loop of copying pkgdir into > pkgdir/..Rcheck/vign_test, which is interrupted at some point by a > segfault (at le...
2010 Feb 02
3
Error with R CMD check - Packages required but not available:
...ed my first R package myPackage1. Now I want to create another R package myPackage2 which requires functions from myPackage1. However when I try R CMD check myPackage2 I get the following error * checking for working pdflatex ... OK * using log directory ''.../myPackage/myPackage2.Rcheck'' * using R version 2.9.2 (2009-08-24) * using session charset: UTF-8 * checking for file ''myPackage2/DESCRIPTION'' ... OK * checking extension type ... Package * this is package ''myPackage2'' version ''1.0'' * checking package dependenc...
2008 Sep 09
1
building a package that contains S4 classes and methods
...t;%s-internal.R", : deparse may be incomplete I keep going in spite of the warnings with R CMD check --no-examples TDC and I get * checking for working pdflatex ... OK * using log directory ''/home/mariepierre/Packages/PermAlgo/PermAlgo/PermAlgo2/TDC.Rcheck'' * using R version 2.7.1 (2008-06-23) * using session charset: UTF-8 * checking for file ''TDC/DESCRIPTION'' ... OK * checking extension type ... Package * this is package ''TDC'' version ''1.0'' * checking package dependencies ... OK * c...
2004 Sep 28
2
package error message
...9;GammaTest/DESCRIPTION'' ... OK * checking if this is a source package ... OK * checking whether package ''GammaTest'' can be installed ... ERROR Installation failed. See ''c:/Documents and Settings/Samuel Kemp/My Documents/R Files/GammaTest.Rcheck/00install.out'' for details. This file contains the following..... installing R.css in c:/DOCUME~1/SAMUEL~1/MYDOCU~1/RFILES~1/GAMMAT~1.RCH ---------- Making package GammaTest ------------ adding build stamp to DESCRIPTION make[2]: *** No rule to make target `R&...
2005 Oct 13
2
RCMD help
Hi dears, I have difficulty to build a package ! I use Windows XP HOME, with and Intel PVI 2.66Ghz processor and 512MB of memory I use RCMD check pyra1 and I got this : * using log directory ''C:/DOCS/R/pyra1.Rcheck'' * using * checking for file ''pyra1/DESCRIPTION'' ... OK * checking extension type ... Package * this is package ''pyra1'' version ''1.0'' * checking if this is a source package ... OK ERROR Installation failed. Then I use RCMD build -...
2013 Mar 13
2
Failed to locate 'weave' output file / vignette product does not have a known filename extension
...xperiment/pkgs/ppiData (login: readonly password: readonly) As you can see, there is no .tex file in the source of the package, but after running R CMD build on it, the resulting .tar.gz file contains ppiData/inst/doc/ppiData.tex Then the package fails check (excerpt of ppiData.Rcheck/00install.out): Error in vignette_type(Outfile) : Vignette product ?ppiData.tex? does not have a known filename extension (?NA?) ERROR: installing vignettes failed * removing ?/home/biocbuild/bbs-2.12-data-experiment/meat/ppiData.Rcheck/ppiData? This package does not...
2018 Jan 17
2
Help making first dataset R package
...directory ?src? contains: convert_from_xml.R These are unlikely file names for src files. 2. * checking whether package ?folkeafstemninger? can be installed ... WARNING Found the following significant warnings: Warning: no source files found See ?/home/mm/gits/folkeafstemninger.Rcheck/00install.out? for details. 3. * checking package subdirectories ... WARNING Subdirectory ?data? contains no data sets. Subdirectory ?src? contains no source files. 4. * checking contents of ?data? directory ... WARNING Files not of a type allowed in a ?data? directory: ?folkeafstemninger.R...