search for: rcheck

Hi, there, I used R CMD check to build my "ATGGS" package under window XP system. My R version is 2.7.2. But I encounter some problems. The log file is like: ********************************************************************************** installing R.css in C:/ATGGS.Rcheck ---------- Making package ATGGS ------------ adding build stamp to DESCRIPTION installing R files installing inst files find: `C:/ATGGS.Rcheck/ATGGS/csvscripts': Permission denied make[2]: *** [C:/ATGGS.Rcheck/ATGGS/inst] Error 1 make[1]: *** [all] Error 2 make: *** [pkg-ATGGS] Error 2...

Hi, there, I used R CMD check to build my "ATGGS" package under window XP system. My R version is 2.7.2. But I encounter some problems. The log file is like: ********************************************************************************** installing R.css in C:/ATGGS.Rcheck ---------- Making package ATGGS ------------ adding build stamp to DESCRIPTION installing R files installing inst files find: `C:/ATGGS.Rcheck/ATGGS/csvscripts': Permission denied make[2]: *** [C:/ATGGS.Rcheck/ATGGS/inst] Error 1 make[1]: *** [all] Error 2 make: *** [pkg-ATGGS] Error 2...

Dear R devel I am experiencing a problem using R CMD check. I tried to specify the argument outdir, but get every time the error message: Warning: unknown option ‘--outdir==RCHECK’ This happens both on R 2.15.2 Linux, as well as R 3.0.1 Windows, with latest Rtools. Is it just that I am not passing the argument the right way, or is there an issue with R CMD check? I tried to write the argument in many differents ways, but it always fails. Standard way I tried is: $ R CMD ch...

...checked BUGS and found some references to similar behavior when R_HOME is set? Here is what I get: (1) Fresh build of 1.4.1 under Linux/RH-7.2. All tests pass. > R CMD check ctest * checking for working latex ... OK * using log directory `/home/andyj/stat/R-1.4.1/library/ctest.Rcheck' Installing *source* package `ctest' ... R help >>> Building/Updating help pages for package `ctest' Formats: text html latex example At this point R hangs. (2) Just installed 1.4.1 on Win200 using Prof. Ripley single file installer...

...folder is there? This is how the thing progress is on my command promp: _______________________________________________ C:\Stat\R\BxC\library.sources>c:\stat\r\R-2.4.1\bin\Rcmd check MethComp * checking for working latex ... OK * using log directory 'C:/Stat/R/BxC/library.sources/MethComp.Rcheck' * using R version 2.4.1 (2006-12-18) * checking for file 'MethComp/DESCRIPTION' ... OK * this is package 'MethComp' version '0.0.8' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'MethComp' can be...

...and build run to conclusion without reporting formal errors or warnings. Next, Rcmd check gives me a lot of nice OK's (even: * checking Rd files ... OK), and then * checking Rd cross-references ... WARNING Error in Rd_db(package, lib.loc = lib.loc) : directory 'M:/R/packages/penalized.Rcheck/penalized' does not contain Rd objects Calls: <Anonymous> -> .build_Rd_xref_db -> Rd_db Execution halted Again puzzling! I get the impression that the error message is not meant for me (I'm not the one who is supposed to put Rd objects into M:/R/packages/penalized.Rcheck/penali...

Hello, There seems to be a minor conflict of interesting in R CMD check. It creates a log directory, then gives a WARNING about it being there: * using log directory /home/darstr/Repitools_github/pkg/Repitools.Rcheck * using R version 2.13.0 RC (2011-04-05 r55310) * using platform: x86_64-unknown-linux-gnu (64-bit) * using session charset: UTF-8 ... ... * checking package subdirectories ... WARNING Found the following directory(s) with names of check directories: ./Repitools.Rchec...

...ned in previous versions, the long version '--outdir' is not recognised: For `R CMD check --outdir=mydir pkg_0.1.tar.gz` we get: Warning: unknown option ‘--outdir=mydir’ But with `R CMD check -o mydir pkg_0.1.tar.gz` we get: * using log directory ‘/home/renaud/Documents/projects/mydir/pkg.Rcheck’ ... which works perfectly fine, and puts pkg.Rcheck in 'mydir'. Renaud [[alternative HTML version deleted]]

...urdoch-sutherland.com/Rtools/), in combination with the newest version of R (2.3.1), yet when doing this I receive the following message while compiling the system: > R CMD check log2html * checking for working latex ...latex: not found NO * using log directory 'D:/tmp/log2html.Rcheck' * using Version 2.3.1 (2006-06-01) * checking for file 'log2html/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'log2html' version '1.0-1' * checking package dependencies ... OK * checking if this is a source package...

In version 2.8.1, running Rcmd check on the package foo would leave the file foo-manual.tex in the folder foo.Rcheck. But as of 2.9.0 only foo-manual.pdf and foo-manual.log are there. Is this intentional? Anyway it is inconvenient, because I would occasionally like to include the manual at the end of a set of exercises, and this was a convenient file to \input with a few select %'s added. br. Bendix ______...

In revising the splancs package, I use R CMD check. After a number of changes to various files in the directory tree, R CMD check fails at the * checking for undocumented objects ... ERROR stage as shown below. But running undoc() in R (pointed at the Rcheck directory, not on the older version) doesn't show the same error, and grep on the Rcheck R code finds the function. I ran undoc() under debug() too, to be sure that it was looking in the Rcheck location, not the default library. Roger PS: Specifically I was responding to Kurt's note re: $...

...#39;m having difficulty building packages and I cannot seem to solve the problem. I'm using R-2.1.1pat on Windows XP. Here is what I tried: D:\Users\sundard\slib\sundar\R>R CMD CHECK sundar * checking for working latex ... OK * using log directory 'D:/Users/sundard/slib/sundar/R/sundar.Rcheck' * using R version 2.1.1, 2005-06-21 * checking for file 'sundar/DESCRIPTION' ... OK * this is package 'sundar' version '1.1' * checking if this is a source package ... OK installing R.css in D:/Users/sundard/slib/sundar/R/sundar.Rcheck ---------- Making package sunda...

...file each time it is run, I use a R/zzz.R file with an .onLoad() and .onUnload() functions to take care of loading and unloading my shared library. The problem: if I load my library from a local directory, then the unloading of the package fails, e.g: # loads fine >library(Foo, lib.loc=".Rcheck") >unloadNamespace("Foo") Warning message: .onUnload failed in unloadNamespace() for 'Foo', details: call: library.dynam.unload("Foo", libpath) error: shared library 'Foo' was not loaded # I traced it a little: >library.dynam.unload("Foo&quo...

Hi: I have have taken over from a colleague who prepared an R package and failed to build it on Windows. I am doing this with unix as I am a mac user. Below is the output I get when I use the build command: [gattuso:unix/R/CO2.Rcheck] gattuso% R CMD build CO2 * checking for file 'CO2/DESCRIPTION' ... OK * preparing 'CO2': * checking whether 'INDEX' is up-to-date ... NO * use '--force' to overwrite the existing 'INDEX' * removing junk files * building 'CO2_1.0.tar.gz' tar: Unable t...

...th machines: >>> On 64-bit Windows: R\bin\R.exe CMD build ACME --> produces no output at all and returns code 0. >>> On 32-bit Windows: R\bin\R.exe CMD check --no-vignettes --timings affypdnn_1.23.0.tar.gz * using log directory 'E:/biocbld/bbs-2.7-bioc/meat/affypdnn.Rcheck' * using R version 2.12.0 Under development (unstable) (2010-08-26 r52817) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'affypdnn/DESCRIPTION' ... OK * this is package 'affypdnn' version...

...ied to build the package again, some errors popped up. Could you please help? When I paste the offending function into an R it works correctly. But the package build breaks. $ R CMD check ansecon * checking for working pdflatex ... OK * using log directory '/Users/ajayshah/L/R/packages/ansecon.Rcheck' * using R version 2.8.1 (2008-12-22) * using session charset: ASCII * checking for file 'ansecon/DESCRIPTION' ... OK * this is package 'ansecon' version '0.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking for executable...

...of getting round this. Perhaps I have misunderstood the NEWS? I can't find this behaviour documented elsewhere. R CMD check output given at the end, Thanks, Heather ## original D:\gnm>RCMD CHECK gnm RCMD CHECK gnm * checking for working latex ... OK * using log directory 'd:/gnm/gnm.Rcheck' * using Version 2.3.1 (2006-06-01) * checking for file 'gnm/DESCRIPTION' ... OK * this is package 'gnm' version '0.8-5' * checking package dependencies ... OK * checking if this is a source package ... WARNING Subdirectory 'gnm/src' contains object files. * chec...

...kages on a PC running Windows XP but experience problems. However, it is ok when there is no inst directory in a package. Any help would be appreciated. The following is an example, C:\work>R CMD check VR_7.2-19.tar.gz * checking for working latex ... OK * using log directory 'C:/work/VR.Rcheck' * using R version 2.1.1, 2005-06-20 * checking for file 'VR/DESCRIPTION' ... OK * looks like 'VR' is a package bundle * this is bundle 'VR' version '7.2-19' * checking if this is a source bundle ... OK installing R.css in C:/work/VR.Rcheck Looks like `C:/work/...

...my gfortran configuration, > (that is ./configure, make, > make install was fine), but now trying to install a source package > I get: > > yzzy: R CMD check kuantile > * checking for working latex ... OK > * using log directory '/Users/roger/Projects/kuantile/kuantile.Rcheck' > * using Version 2.3.0 Under development (unstable) (2006-03-12 r37524) > * checking for file 'kuantile/DESCRIPTION' ... OK > * this is package 'kuantile' version '1.00' > * checking package dependencies ... OK > * checking if this is a source package .....

...o g++ -shared -o Ruchardet.so getCharEncoding.o -L/home/gogamza/R/x86_64-pc-linux-gnu-library/2.15/Rcpp/lib -lRcpp -Wl,-rpath,/home/gogamza/R/x86_64- pc-linux-gnu-library/2.15/Rcpp/lib -L/usr/local/lib -L/usr/lib/ -lstdc++ -luchardet -L/usr/lib/R/lib -lR installing to /home/gogamza/work/Ruchardet.Rcheck/Ruchardet/libs ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/home/gogamza/work/Ruchardet.Rcheck/Ruchardet...