search for: r_package_dir

...een R and a third-party library (Netica.dll). The vendor supplies this library in both a 32 bit and a 64 bit version. Under Linux, I use configure to link against the 32 or 64 bit version of libnetica.a as appropriate. Under Windows, I use configure.win to copy the 32 and 64 bit versions to "$R_PACKAGE_DIR/libs/i386" and "$R_PACKAGE_DIR/libs/x64" respectively. Installation: This mostly works. If I run R CMD INSTALL RNetica, R detects the configure.win and only builds the 64 bit version of RNetica. [I'm not entirely clear on why R doesn't at least try to build both architect...

...een R and a third-party library (Netica.dll). The vendor supplies this library in both a 32 bit and a 64 bit version. Under Linux, I use configure to link against the 32 or 64 bit version of libnetica.a as appropriate. Under Windows, I use configure.win to copy the 32 and 64 bit versions to "$R_PACKAGE_DIR/libs/i386" and "$R_PACKAGE_DIR/libs/x64" respectively. Installation: This mostly works. If I run R CMD INSTALL RNetica, R detects the configure.win and only builds the 64 bit version of RNetica. [I'm not entirely clear on why R doesn't at least try to build both architect...

...ed elsewhere (it is indeed part of a Tcl/Tk package). So, I want to install it in /tklibs/tkpackage/alib.dll (under Windows) in my compiled package. I do manage to compile it in /src, but cannot copy it at the right place. I tried using a cleanup.win file that contains: cp src/alib.dll "${R_PACKAGE_DIR}/tklibs/tkpackage/alib.dll" but it does not work. The Writing R extensions manual explicitly says not to use ${DPKG}. Yet, the following instruction does the job under R 2.8.0: cp src/alib.dll "${DPKG}/tklibs/tkpackage/alib.dll" I become really desperate to get it working! Thank...

Hello R developers, installing R 2.0.0 from source on a Linux Debian system (gcc 3.2.2) - which worked just fine - I encountered the following problem when trying to update/install packages with the option --with-package-versions: example: RUnit 0.4.0 (also on CRAN) R20 CMD INSTALL -l /mnt/local/R/R-2.0.x-libs-EpiR --with-package-versions RUnit_0.4.0.tar.gz or after untaring R20 CMD INSTALL

Line 1204 (right now) of svn/r-devel/doc/manual/R-exts.texi has dest <- file.path(R_PACKAGE_DIR, paste0('bin', R_ARCH) which lacks a closing ) -- two open, only one close right now. Dirk [1] I would have reported a bug, but I am aware of a recent and not-so-friendly response when bugzilla was used to report a typo. -- http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian....

...ackages") was not found Error in "class<-"(*tmp*, value = Class) : couldn't find function "objWithClass" Error in library("methods") : .First.lib failed Execution halted /usr/local/lib/R/bin/INSTALL: line 1: 14240 Broken pipe cat "${R_PACKAGE_DIR}/R/${pkg}" ERROR: execution of package source for 'Rggobi' failed many thanks for your help Christoph -- Christoph Lehmann <christoph.lehmann at gmx.ch>

...ine 1: 1856 Done ( echo "options(save.image.defaults=${save_image_defaults})"; if test -s R_PROFILE.R; then cat R_PROFILE.R; fi; echo "invisible(.libPaths(c(\"${lib}\", .libPaths())))"; cat "${R_PACKAGE_DIR}/R/${pkg}" ) 1857 Segmentation fault | ${R_EXE} --slave --save ${save_args} ERROR: execution of package source for 'DBI' failed Can somebody help me? Thanks a lot, Kind regards, Joke. Joke Allemeersch Kasteelpark Arenberg 10 3001 Heverlee (Leu...

...latex example reStruct text html latex example /home/sfalcon/sw/R-related/R-1.8.1/bin/INSTALL: line 1: 8133 Segmentation fault ${R_CMD} perl "${R_HOME}/share/perl/build-help.pl" ${build_help_opts} "${pkg_dir}" "${lib}" "${R_PACKAGE_DIR}" "${pkg_name}" ERROR: building help failed for package 'nlme' ** Removing '/home/sfalcon/sw/R-related/R-1.8.1/library/nlme' make[2]: *** [nlme.ts] Error 1 make[2]: Leaving directory `/home/sfalcon/sw/R-related/R-1.8.1/src/library/Recommended' make[1]: *** [recomm...

...on: 1. Simple installation: R CMD INSTALL RSQLite-.tar.gz the installation automatically detects whether SQLite is available in any of your system directories; if it's not available, it installs the SQLite engine and the R-SQLite interface under the package directory $R_PACKAGE_DIR/sqlite. 2. If you have SQLite installed in a non-system directory (e.g, in $HOME/sqlite), a) You can use export PKG_LIBS="-L$HOME/sqlite/lib -lsqlite" export PKG_CPPFLAGS="-I$HOME/sqlite/include" R CMD INSTALL RSQLite-.tar.gz b) or you can...

...ackages") was not found Error in "class<-"(*tmp*, value = Class) : couldn't find function "objWithClass" Error in library("methods") : .First.lib failed Execution halted /usr/local/lib/R/bin/INSTALL: line 1: 11697 Broken pipe cat "${R_PACKAGE_DIR}/R/${pkg}" ERROR: execution of package source for 'Rggobi' failed -- many thanks for your help Christoph -- Christoph Lehmann <christoph.lehmann at gmx.ch>

...@@ -863,7 +863,7 @@ do_install_source () { ## When installing from a source directory under version control, we ## should really exclude the subdirs CVS, .svn (Subversion) and ## .arch-ids (arch). - for d in CVS .svn .arch-ids; do + for d in CVS .svn .arch-ids .git; do find "${R_PACKAGE_DIR}" -name ${d} -type d -prune \ -exec rm -rf \{\} \; 2>/dev/null done diff --git a/src/scripts/build.in b/src/scripts/build.in index 15c9e0c..ee880d9 100755 --- a/src/scripts/build.in +++ b/src/scripts/build.in @@ -181,6 +181,7 @@ foreach my $pkg (@ARGV) { print EXCLUDE &quo...

..., href ){ sprintf( '<a href="%s">%s</a>', href, txt ) } line <- function( link, txt ){ sprintf( '<tr><td width="25%%">%s</td>\n<td>%s</td></tr>\n', link, txt ) } ooindex.file <- file.path( Sys.getenv( "R_PACKAGE_DIR" ) , "html", "00Index.html" ) if( file.exists( ooindex.file ) ){ # read the 00Index.html file ooindex <- readLines( ooindex.file ) bottom <- grep( "^</table>", ooindex) bottom <- bottom[ length(bottom) ] # add java specific things txt <-...

...0:00 8421 pts/5 D+ 1:11 /usr/lib/R/bin/exec/R --vanilla When I kill the 8421 process, I get: /usr/lib/R/bin/INSTALL: line 381: 8088 Done echo "invisible(.libPaths(c(\"${lib}\", .libPaths()))); tools:::.install_package_indices(\".\", \"${R_PACKAGE_DIR}\")" 8089 Killed | R_DEFAULT_PACKAGES=NULL LANG=C "${R_EXE}" --vanilla >/dev/null ERROR: installing package indices failed I let this run for over 6 hours, and it didn't seem to complete (or make any changes). Unfortunately, lots of Bioconductor s...