search for: r_include_dir

As you may recall, a Debian user complained last year about how R is out of line with respect to the filesystem standards (where, in essence, architecture independent files should be in /usr/share, not /usr/lib). While I more or less just told him to get lost, I think it was mostly BDR who actually added support for this over the summer -- so a public Thanks! first. As of a few weeks ago, I now

Hello, In installation/R/bin/R i notice 1. R_HOME_DIR is hard coded e.g. R_HOME_DIR=/usr/local/lib64/R 2. It ignores R_HOME_DIR echo "WARNING: ignoring environment value of R_HOME" 3. R_SHARE_DIR, R_INCLUDE_DIR and R_DOC_DIR are also hard coded. Is there a reason why these settings do not read the values from the environment variables of the same name (assuming they exist) and defaulting to these hard coded values in case they dont? Regards Saptarshi

Hello, I'm trying to compile R-3.3.3 or R-3.4.0 on a RHEL6 system that I've prefixed the latest headers down a shared utility path, I've sourced this path in LD_LIBRARY_LATH, R_LD_LIBRARY_PATH, and dropping the headers down /src/include which appears to be the default R_include_dir but it will not accept these any other place than /usr/include. Is there a way to properly define a prefixed includedir and libdir for R that I'm missing? I was able to do this in 3.2.4-revised successfully. I see the comments that -with-system-zlib is now default, but I see no options to ov...

...;; esac if test -n "${R_HOME}" && \ test "${R_HOME}" != "${R_HOME_DIR}"; then echo "WARNING: ignoring environment value of R_HOME" fi R_HOME="${R_HOME_DIR}" export R_HOME R_SHARE_DIR="${R_HOME}/share" export R_SHARE_DIR R_INCLUDE_DIR="${R_HOME}/include" export R_INCLUDE_DIR R_DOC_DIR="${R_HOME}/doc" export R_DOC_DIR ... ---- There are some things that I don't understand about the original script, though. Why does it start with a test that always succeeds? Why does it ignore R_HOME? I didn't change...

Hello, I just tried configuring R to use architecture-dependent subdirs $ r_arch=x86_64 ./configure --prefix=/u/smat/konis/testdir on a Debain Squeeze box $ uname -a Linux smapc007 2.6.32-5-686 #1 SMP Sat Sep 18 02:14:45 UTC 2010 i686 GNU/Linux After building and installing, the Rconfig.h ended up in .../lib/R/include/x86_64 but R.h still includes it as #include <Rconfig.h>

Dear Rexperts, after building R 2.4.0 from source in a temporary directory (*without* installation), and subsequently moving the whole source/build tree to another location, I have noticed that I had to change the variables R_SHARE_DIR, R_INCLUDE_DIR, and R_DOC_DIR in the wrapper-script /lib/R/bin/R as to reflect the current situation. However, when I try to run the HTML help via help.start() I still get an error message saying that: sh: /tmp/r-project-build/usr/lib/R/share/sh/help-links.sh: No such file or directory Interestingly, the sy...

...to missing writing permissions. I managed to get full access to a directory on my C:\ drive now - but how do I specify that all libraries shall be installed into this directory? In Rcmd_environ I have the following entries: ## from R.sh R_SHARE_DIR="C:\\Program Files\\R\\R-2.13.1\share" R_INCLUDE_DIR="C:\\Program Files\\R\\R-2.13.1\share\include" R_DOC_DIR="C:\\Program Files\\R\\R-2.13.1\share\doc" R_ARCH= R_LIBS_USER="C:\\Program Files\\R\\R-2.13.1\\library" R_LIBS="C:\\Program Files\\R\\R-2.13.1\\library" In Rprofile.site I have the following entries:...

R-help -- I built R-2.2.1 in my own directory on a sun (solaris). Now I would like the sysadmin to move the contents to /usr/local/lib and place the binary in /usr/local/bin. No problem. However, the RHOME variable defaults to the directory from which R was built so it is not usable by anyone but me or ROOT. I would like to avoid building this again if possible. Any ideas? Thanks, Dan

...component, p) else file.path(rh, component), share = if (nzchar(p <- Sys.getenv("R_SHARE_DIR"))) p else file.path(rh, component), doc = if (nzchar(p <- Sys.getenv("R_DOC_DIR"))) p else file.path(rh, component), include = if (nzchar(p <- Sys.getenv("R_INCLUDE_DIR"))) p else file.path(rh, component), modules = if (nzchar(p <- .Platform$r_arch)) file.path(rh, component, p) else file.path(rh, component), file.path(rh, component)),'"') }, ns="base", envir=baseenv()) lockBinding("R.home", baseenv()...

..._ACCESSIBILITY_ALWAYS_ON" "R_ARCH" < [45] "R_BROWSER" "R_BZIPCMD" < [47] "R_CMD" "R_DOC_DIR" < [49] "R_ENVIRON" "R_ENVIRON_USER" < [51] "R_GZIPCMD" "R_HOME" < [53] "R_INCLUDE_DIR" "R_LIBS" < [55] "R_LIBS_SITE" "R_LIBS_USER" < [57] "R_OSTYPE" "R_PAPERSIZE" < [59] "R_PAPERSIZE_USER" "R_PDFVIEWER" < [61] "R_PLATFORM" "R_PRINTCMD" < [63] "R_PROF...

...ALWAYS_ON" "R_ARCH" > < [45] "R_BROWSER" "R_BZIPCMD" > < [47] "R_CMD" "R_DOC_DIR" > < [49] "R_ENVIRON" "R_ENVIRON_USER" > < [51] "R_GZIPCMD" "R_HOME" > < [53] "R_INCLUDE_DIR" "R_LIBS" > < [55] "R_LIBS_SITE" "R_LIBS_USER" > < [57] "R_OSTYPE" "R_PAPERSIZE" > < [59] "R_PAPERSIZE_USER" "R_PDFVIEWER" > < [61] "R_PLATFORM" "R_PRINTCMD" > < [6...

...> I'm trying to compile R-3.3.3 or R-3.4.0 on a RHEL6 system that I've > prefixed the latest headers down a shared utility path, I've sourced > this path in LD_LIBRARY_LATH, R_LD_LIBRARY_PATH,??and dropping the > headers down /src/include which appears to be the default > R_include_dir but it will not accept these any other place than > /usr/include.??Is there a way to properly define a prefixed > includedir and libdir for R that I'm missing???I was able to do this > in 3.2.4-revised successfully.??I see the comments that -with-system- > zlib is now default, but I...

Hello R-devel, Currently on Unix-like systems, Sys.which incorporates the absolute path to the `which` executable, obtained at the configure stage: > ## hopefully configure found [/usr]/bin/which > which <- "@WHICH@" > if (!nzchar(which)) { > warning("'which' was not found on this platform") This poses a problem for the Spack package

...system/apps:/boot/system/preferences" export PWD="/Store/buildr/src/library/tools" export R_DEFAULT_PACKAGES="NULL" export R_DOC_DIR="/Store/buildr/doc" export R_ENVIRON="" export R_ENVIRON_USER="" export R_HOME="/Store/buildr" export R_INCLUDE_DIR="/Store/buildr/include" export R_PROFILE="" export R_PROFILE_USER="" export R_SHARE_DIR="/Store/buildr/share" export SAFEMODE="no" export SED="/bin/sed" export SHLVL="7" export TERM="xterm" export TTY="/dev/tt/p1&q...

...4/qt-3.3/include QTLIB /usr/lib64/qt-3.3/lib R_ARCH R_BROWSER /usr/bin/firefox R_BZIPCMD /usr/bin/bzip2 R_DOC_DIR /cm/shared/apps/R/3.2.1/lib64/R/doc R_GZIPCMD /bin/gzip R_HOME /cm/shared/apps/R/3.2.1/lib64/R R_INCLUDE_DIR /cm/shared/apps/R/3.2.1/lib64/R/include R_LIBS_SITE R_LIBS_USER ~/R/x86_64-unknown-linux-gnu-library/3.2 R_PAPERSIZE a4 R_PDFVIEWER /usr/bin/xdg-open R_PLATFORM x86_64-unknown-linux-gnu R_PRINTCMD lpr R_RD4PDF ti...

...s" > export PWD="/Store/buildr/src/library/tools" > export R_DEFAULT_PACKAGES="NULL" > export R_DOC_DIR="/Store/buildr/doc" > export R_ENVIRON="" > export R_ENVIRON_USER="" > export R_HOME="/Store/buildr" > export R_INCLUDE_DIR="/Store/buildr/include" > export R_PROFILE="" > export R_PROFILE_USER="" > export R_SHARE_DIR="/Store/buildr/share" > export SAFEMODE="no" > export SED="/bin/sed" > export SHLVL="7" > export TERM="xterm&...

I am building from source on RHEL 4 and have run into a problem while running "make check": running code in 'lapack.R' ...make[3]: *** [lapack.Rout] Error 1 make[3]: Leaving directory `/opt/R/R-2.9.1/tests' make[2]: *** [test-Specific] Error 2 make[2]: Leaving directory `/opt/R/R-2.9.1/tests' make[1]: *** [test-all-basics] Error 1 make[1]: Leaving

Hello Everyone, After trying several ways to compile R 3.2.2 without luck, I?m reaching out for help. The ?make check? does not hanges for some reason and when trying to install a package it cannot list the download sites (see below). What could be the problem? ./configure --enable-R-shlib --enable-BLAS-shlib hostname = test uname -m = x86_64 uname -r = 2.6.32-573.7.1.el6.x86_64 uname -s =

...39; R_PAPERSIZE='letter' R_PDFVIEWER='/usr/bin/open' R_PLATFORM='x86_64-unknown-linux-gnu' R_PRINTCMD='' R_PROFILING='' R_RD4DVI='ae' R_RD4PDF='times,hyper' R_UNZIPCMD='/usr/bin/unzip' R_XTRA_CFLAGS='' R_XTRA_CPPFLAGS2='-I$(R_INCLUDE_DIR)' R_XTRA_CPPFLAGS='' R_XTRA_CXXFLAGS='' R_XTRA_FFLAGS='' R_XTRA_LIBS='' R_ZIPCMD='/usr/bin/zip' SAFE_FFLAGS='' SED='//bin/sed' SET_MAKE='' SHELL='/bin/sh' SHLIB_CFLAGS='' SHLIB_CXXFLAGS='' SHLIB_CXXLD='&...