search for: r_home_dir

Hello, I was looking at the R (installed on RHEL6) shell script and saw R_HOME_DIR=/usr/lib64/R. Nowhere (and I could have got it wrong) does it read in the environment value R_HOME_DIR. I have the need to rsync the entire folder below /usr/lib64/R to another computer into another directory location. Without changing the R shell script, how can i force it read in R_HOME_DIR? Or...

...e configure option --disable-rpath doesn't have any influence on whether hardcoded paths are used in these programs. Proposed solution: Let bin/R and bin/Rscript infer their own positions using something like $(dirname $(readlink -f "$0")) (for bin/R) and set the other paths (such as R_HOME_DIR in bin/R) relative to these. The start of bin/R could look something like this: ---- if test -z "${R_HOME_DIR}"; then R_HOME_DIR=$(dirname $(readlink -f "$0"))/../lib/R fi case "linux-gnu" in linux*) run_arch=`uname -m` case "$run_arch" in...

Hello, In installation/R/bin/R i notice 1. R_HOME_DIR is hard coded e.g. R_HOME_DIR=/usr/local/lib64/R 2. It ignores R_HOME_DIR echo "WARNING: ignoring environment value of R_HOME" 3. R_SHARE_DIR, R_INCLUDE_DIR and R_DOC_DIR are also hard coded. Is there a reason why these settings do not read the values from the environment variables o...

I have just installed the version of R for Linux Enterprise Server AS. When R is launched, I receive the following error message: R: error while loading shared libraries: libg2c.so.o cannot open shared object file: no such file or directory I have added the path to the library above to the /usr/etc/ld.so.conf file and then run ldconfig -v. The listing then shows that the libg2c.so.o is

R-help -- I built R-2.2.1 in my own directory on a sun (solaris). Now I would like the sysadmin to move the contents to /usr/local/lib and place the binary in /usr/local/bin. No problem. However, the RHOME variable defaults to the directory from which R was built so it is not usable by anyone but me or ROOT. I would like to avoid building this again if possible. Any ideas? Thanks, Dan

...do this is to suffix a version number to the executable and any file tree(s) that it requires. The R-1.2.3 release does not currently do this, but it looks like only a couple of lines of changes are needed to accomplish the job, and I've done so locally manually. (1) In the R script, change R_HOME_DIR=/usr/local/lib/R to R_HOME_DIR=/usr/local/lib/R-1.2.3 and name the tree that way during installation. (2) At installation time, first install the executable as /usr/local/bin/R-1.2.3, then remove /usr/local/bin/R, then do "ln -s R-1.2.3 /usr/local/bin/R" or "...

...talled an R version R-1.3.1 on Linux RedHat 6.2. As I want to install R-1.5.0, I have first followed a suggestion of Peter Dalgaard (mail in FAQ) in order to keep the version R-1.3.1 by renaming /usr/local/lib/R and /usr/local/bin/R (/usr/local/lib/R-1.3.1 and /usr/local/bin/R-1.3.1 )and then set R_HOME_DIR to the new location. Now I run R by typing R-1.3.1 After keeping the version R-1.3.1, I have tried to install R-1.5.0. But when I try to untar R-1.5.0.z.tgz with tar xvfz R-1.5.0 I get at the end the following error message: gzip: stdin: unexpected end of file tar: Unexpected EOF in archive tar...

Hello R-devel, Currently on Unix-like systems, Sys.which incorporates the absolute path to the `which` executable, obtained at the configure stage: > ## hopefully configure found [/usr]/bin/which > which <- "@WHICH@" > if (!nzchar(which)) { > warning("'which' was not found on this platform") This poses a problem for the Spack package

...t;R_HOME>/bin/ INSTALL. This prevents the compilation C files. Please note that I have not set the R_HOME environment variable; it is undefined in my shell. - Here are lines 29-32 from <R_HOME>/bin/R: if test -n "${R_HOME}" && \ test "${R_HOME}" != "${R_HOME_DIR}"; then echo "WARNING: ignoring environment value of R_HOME" fi - Here is line 606 of <R_HOME>/bin/INSTALL: CLINK_CPPFLAGS=`echo "tools:::.find_cinclude_paths(file='DESCRIPTION')" | \ "${R_EXE}" --vanilla --slave` The work-around: F...

I am running R 1.2.1 under Mandrake Linux 7.2 (installed from RPM) and I installed a few packages using install.packages() . Now, I am trying to upgrade these packages using update.packages() but I believe I am running into some kind of error. See below. Any tips will be greatly welcome. Thanks in advance. Francisco PS: update.packages() only tries to update wle from version 0.3 to 0.4, gives

On Wed, Sep 21, 2016 at 7:39 PM, Tom Callaway <tcallawa at redhat.com> wrote: > > On 09/16/2016 10:28 AM, Jeroen Ooms wrote: > > Where are the R docs located on EL6? It seems neither R.home("doc") > > nor Sys.getenv("R_DOC_DIR") exists? > > /usr/share/doc/R-3.3.1 > Can we set this in R_DOC_DIR accordingly so that it can be programmatically

I'm trying to install packages in Gentoo Linux using install.packages(). The packages download fine, but when it comes to installation, I get this message: WARNING: ignoring environment value of R_HOME /var/tmp/portage/R-1.5.1/image//usr/lib/R/bin/Rcmd: /var/tmp/portage/R-1.5.1/image//usr/lib/R/bin/Rcmd: No such file or directory I have the R_HOME set to the correct value (/usr/lib/R), but I

...10.3. When I try to start the program from the GUI I get the following error message: Unable to start R: R_HOME is not set. Please set all required environment variables before running this program. It is set to the proper location according to all the documentation I can find. I have R_HOME_DIR=/Library/Frameworks/R.framework/Resources. R 2.0.0 will launch from the command-line without any difficulty. Any ideas or directions to take to resolve this would be greatly appreciated. aric

Hi, I forgot tools/rsync-recommended before ./configure Thanks On Mon, Mar 9, 2015 at 6:51 PM, Kevin Ushey <kevinushey at gmail.com> wrote: > I believe you need to set the environment variable R_HOME_DIR to the > path pointing to your R-devel installation before launching RStudio. > > On Mon, Mar 9, 2015 at 9:49 AM, Karim Mezhoud <kmezhoud at gmail.com> wrote: > > Dear All, > > I am actually on R-devel using shell consol. When I run RStudio, it can't > > find li...

I'm trying to run multiple simulations using R on a cluster of pentiums running Solaris X86 by batching the R routines and simultaneously farming them out to the cluster nodes. This works fine on some of the machines, but on others the directory structure is mapped differently, so that when I try to run R, it can't be found, I can get around this by running /net/mp1/space/local/bin/R

Hi helpteam, may you send me the exact syntax for getting the estimated degrees of freedom for a gam? I tried to do it by name <- edf(gam_name) but this didn't work. Thanks a lot, greetings from Munich, Thomas Nittner -- Thomas Nittner Tel: ++49 89 2180 3197 Akademiestra?e 1 Fax: ++49 89 2180 5042 D - 80799 M?nchen http://www.stat.uni-muenchen.de

As you may recall, a Debian user complained last year about how R is out of line with respect to the filesystem standards (where, in essence, architecture independent files should be in /usr/share, not /usr/lib). While I more or less just told him to get lost, I think it was mostly BDR who actually added support for this over the summer -- so a public Thanks! first. As of a few weeks ago, I now

Hi folks: I have a feeling this must be a FAQ, but I did not find the answer in R Installation and Administration manual. Please point me to the right place to look for answer to this question if it's already answered. I am running 1.4.1 on an Alpha PCA56 (aka 164SX) running Redhat Linux 7.1 (kernel 2.4.19-pre4). I built 1.4.1 from sources and it is installed in /usr/local (the