search for: r_doc_dir

On Wed, Sep 21, 2016 at 7:39 PM, Tom Callaway <tcallawa at redhat.com> wrote: > > On 09/16/2016 10:28 AM, Jeroen Ooms wrote: > > Where are the R docs located on EL6? It seems neither R.home("doc") > > nor Sys.getenv("R_DOC_DIR") exists? > > /usr/share/doc/R-3.3.1 > Can we set this in R_DOC_DIR accordingly so that it can be programmatically found?

Where are the R docs located on EL6? It seems neither R.home("doc") nor Sys.getenv("R_DOC_DIR") exists?

Hello, In installation/R/bin/R i notice 1. R_HOME_DIR is hard coded e.g. R_HOME_DIR=/usr/local/lib64/R 2. It ignores R_HOME_DIR echo "WARNING: ignoring environment value of R_HOME" 3. R_SHARE_DIR, R_INCLUDE_DIR and R_DOC_DIR are also hard coded. Is there a reason why these settings do not read the values from the environment variables of the same name (assuming they exist) and defaulting to these hard coded values in case they dont? Regards Saptarshi

...t "${R_HOME}" != "${R_HOME_DIR}"; then echo "WARNING: ignoring environment value of R_HOME" fi R_HOME="${R_HOME_DIR}" export R_HOME R_SHARE_DIR="${R_HOME}/share" export R_SHARE_DIR R_INCLUDE_DIR="${R_HOME}/include" export R_INCLUDE_DIR R_DOC_DIR="${R_HOME}/doc" export R_DOC_DIR ... ---- There are some things that I don't understand about the original script, though. Why does it start with a test that always succeeds? Why does it ignore R_HOME? I didn't change this stuff. In any case, the changes above did the job for me...

Dear Rexperts, after building R 2.4.0 from source in a temporary directory (*without* installation), and subsequently moving the whole source/build tree to another location, I have noticed that I had to change the variables R_SHARE_DIR, R_INCLUDE_DIR, and R_DOC_DIR in the wrapper-script /lib/R/bin/R as to reflect the current situation. However, when I try to run the HTML help via help.start() I still get an error message saying that: sh: /tmp/r-project-build/usr/lib/R/share/sh/help-links.sh: No such file or directory Interestingly, the system still trie...

...ctory on my C:\ drive now - but how do I specify that all libraries shall be installed into this directory? In Rcmd_environ I have the following entries: ## from R.sh R_SHARE_DIR="C:\\Program Files\\R\\R-2.13.1\share" R_INCLUDE_DIR="C:\\Program Files\\R\\R-2.13.1\share\include" R_DOC_DIR="C:\\Program Files\\R\\R-2.13.1\share\doc" R_ARCH= R_LIBS_USER="C:\\Program Files\\R\\R-2.13.1\\library" R_LIBS="C:\\Program Files\\R\\R-2.13.1\\library" In Rprofile.site I have the following entries: .Library.site="C:\\Program Files\\R\\R-2.13.1\\library"...

R-help -- I built R-2.2.1 in my own directory on a sun (solaris). Now I would like the sysadmin to move the contents to /usr/local/lib and place the binary in /usr/local/bin. No problem. However, the RHOME variable defaults to the directory from which R was built so it is not usable by anyone but me or ROOT. I would like to avoid building this again if possible. Any ideas? Thanks, Dan

Dear R experts, I hope everyone has had a happy easter break. Recently my work included writing R function that need to call external tools. I did this using R's system function for example: system( paste( 'tool', '-input', path_to_input, '-output', path_to_output, '-other_switch', some_val ) ) I have two question about this: 1) Is there a way to implement

...$OS.type == "windows" && nzchar(p <- .Platform$r_arch)) file.path(rh, component, p) else file.path(rh, component), share = if (nzchar(p <- Sys.getenv("R_SHARE_DIR"))) p else file.path(rh, component), doc = if (nzchar(p <- Sys.getenv("R_DOC_DIR"))) p else file.path(rh, component), include = if (nzchar(p <- Sys.getenv("R_INCLUDE_DIR"))) p else file.path(rh, component), modules = if (nzchar(p <- .Platform$r_arch)) file.path(rh, component, p) else file.path(rh, component), file.path(rh, co...

...; < [39] "PWD" "QT4_IM_MODULE" < [41] "QT_ACCESSIBILITY" "QT_IM_MODULE" < [43] "QT_LINUX_ACCESSIBILITY_ALWAYS_ON" "R_ARCH" < [45] "R_BROWSER" "R_BZIPCMD" < [47] "R_CMD" "R_DOC_DIR" < [49] "R_ENVIRON" "R_ENVIRON_USER" < [51] "R_GZIPCMD" "R_HOME" < [53] "R_INCLUDE_DIR" "R_LIBS" < [55] "R_LIBS_SITE" "R_LIBS_USER" < [57] "R_OSTYPE" "R_PAPERSIZE&q...

...39] "PWD" "QT4_IM_MODULE" > < [41] "QT_ACCESSIBILITY" "QT_IM_MODULE" > < [43] "QT_LINUX_ACCESSIBILITY_ALWAYS_ON" "R_ARCH" > < [45] "R_BROWSER" "R_BZIPCMD" > < [47] "R_CMD" "R_DOC_DIR" > < [49] "R_ENVIRON" "R_ENVIRON_USER" > < [51] "R_GZIPCMD" "R_HOME" > < [53] "R_INCLUDE_DIR" "R_LIBS" > < [55] "R_LIBS_SITE" "R_LIBS_USER" > < [57] "R_OSTYPE" &quo...

Hello R-devel, Currently on Unix-like systems, Sys.which incorporates the absolute path to the `which` executable, obtained at the configure stage: > ## hopefully configure found [/usr]/bin/which > which <- "@WHICH@" > if (!nzchar(which)) { > warning("'which' was not found on this platform") This poses a problem for the Spack package

...LAGS="-w" export OLDPWD export PATH=".:/boot/home/config/non-packaged/bin:/boot/home/config/bin:/boot/system/non-packaged/bin:/bin:/boot/system/apps:/boot/system/preferences" export PWD="/Store/buildr/src/library/tools" export R_DEFAULT_PACKAGES="NULL" export R_DOC_DIR="/Store/buildr/doc" export R_ENVIRON="" export R_ENVIRON_USER="" export R_HOME="/Store/buildr" export R_INCLUDE_DIR="/Store/buildr/include" export R_PROFILE="" export R_PROFILE_USER="" export R_SHARE_DIR="/Store/buildr/share...

...vadmin/bin:/opt/dell/srvadmin/sbin:/root/bin PWD /root QTDIR /usr/lib64/qt-3.3 QTINC /usr/lib64/qt-3.3/include QTLIB /usr/lib64/qt-3.3/lib R_ARCH R_BROWSER /usr/bin/firefox R_BZIPCMD /usr/bin/bzip2 R_DOC_DIR /cm/shared/apps/R/3.2.1/lib64/R/doc R_GZIPCMD /bin/gzip R_HOME /cm/shared/apps/R/3.2.1/lib64/R R_INCLUDE_DIR /cm/shared/apps/R/3.2.1/lib64/R/include R_LIBS_SITE R_LIBS_USER ~/R/x86_64-unknown-linux-gnu-library/3.2 R_PAPERSIZE...

...t OLDPWD > export > PATH=".:/boot/home/config/non-packaged/bin:/boot/home/config/bin:/boot/system/non-packaged/bin:/bin:/boot/system/apps:/boot/system/preferences" > export PWD="/Store/buildr/src/library/tools" > export R_DEFAULT_PACKAGES="NULL" > export R_DOC_DIR="/Store/buildr/doc" > export R_ENVIRON="" > export R_ENVIRON_USER="" > export R_HOME="/Store/buildr" > export R_INCLUDE_DIR="/Store/buildr/include" > export R_PROFILE="" > export R_PROFILE_USER="" > export R_...

Hi- I just upgraded R to 3.0.0 from 2.15.1 (which worked fine). When I started trying to install updated versions of the libraries, I saw the following error: > install.packages("lme4") Installing package into 'c:/Docume~1/melissa/R/win-library/3.0' (as 'lib' is unspecified) Warning in install.packages :

Hello Everyone, After trying several ways to compile R 3.2.2 without luck, I?m reaching out for help. The ?make check? does not hanges for some reason and when trying to install a package it cannot list the download sites (see below). What could be the problem? ./configure --enable-R-shlib --enable-BLAS-shlib hostname = test uname -m = x86_64 uname -r = 2.6.32-573.7.1.el6.x86_64 uname -s =