search for: r_chk_calloc

...sr/include/stdlib.h. make[3]: *** [mlutils.o] Error 1 --- R-beta.orig/src/nmath/nmath.h 2005-10-06 19:25:25.000000000 +0900 +++ R-beta/src/nmath/nmath.h 2005-12-13 19:33:59.000000000 +0900 @@ -47,6 +47,7 @@ #define ML_NAN R_NaN void R_CheckUserInterrupt(void); +#undef calloc #define calloc R_chk_calloc #define free R_chk_free -- http://www.nakama.ne.jp, http://r.nakama.ne.jp e-mail : EIJI Nakama <nakama at ki.rim.or.jp>

...-Xlexpall -o ctest.so alnorm.o ansari.o fexact.o kendall.o ks.o prho.o swilk.o -L/usr/lib/gcc-lib/powerpc-apple-machten4/2.8.1 -lg2c -lm ansari.o: In function `errmsg': ansari.c:13: undefined reference to `Rf_error' ansari.o: In function `w_init': ansari.c:21: undefined reference to `R_chk_calloc' ... ansari.c:84: undefined reference to `Rf_choose' ansari.o: In function `pansari': ansari.c:110: undefined reference to `Rf_choose' fexact.o: In function `fexact': ... kendall.c:24: undefined reference to `Rf_sign' kendall.o: In function `ckendall': kendall.c:99: unde...

...It reads: The interface functions are type* Calloc(size_t n, type) ^^^^^^ type* Realloc(any *p, size_t n, type) ^^^^^^ But RS.h makes me think that n should just be an integer giving the number of elements and not necessarily be of type size_t: extern void *R_chk_calloc(size_t, size_t); extern void *R_chk_realloc(void *, size_t); #define Calloc(n, t) (t *) R_chk_calloc( (size_t) (n), sizeof(t) ) #define Realloc(p,n,t) (t *) R_chk_realloc( (void *)(p), (size_t)((n) * sizeof(t)) ) -------------------------------------------------- Dan Davison Committee on Ev...

...unts of detected errors, rerun with: -v ==8682== searching for pointers to 6,739 not-freed blocks. ==8682== checked 13,332,140 bytes. ==8682== ==8682== 56 bytes in 1 blocks are possibly lost in loss record 15 of 55 ==8682== at 0x40045EB: calloc (vg_replace_malloc.c:279) ==8682== by 0x805AA60: R_chk_calloc (memory.c:2368) ==8682== by 0x57C89D6: RODBCDriverConnect (RODBC.c:244) ==8682== by 0x8160A68: do_dotcall (dotcode.c:863) ==8682== by 0x81857CE: Rf_eval (eval.c:489) ==8682== by 0x81895B7: do_set (eval.c:1420) ==8682== by 0x81855B0: Rf_eval (eval.c:463) ==8682== by 0x818631E: do_b...

...clared (first use in this function) Rmpi.c:83: error: 'comm' undeclared (first use in this function) Rmpi.c:83: error: 'MPI_Comm' undeclared (first use in this function) Rmpi.c:83: error: expected expression before ')' token Rmpi.c:83: error: expected ';' before 'R_chk_calloc' Rmpi.c:84: error: 'status' undeclared (first use in this function) Rmpi.c:84: error: 'MPI_Status' undeclared (first use in this function) Rmpi.c:84: error: expected expression before ')' token Rmpi.c:84: error: expected ';' before 'R_chk_calloc' Rmpi.c:8...

....so Gif2R.o GifTools.o runfunc.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' Gif2R.o: In function `imwritegif': /tmp/RtmpEfnBsm/R.INSTALL17c3a7327d4fb/caTools/src/Gif2R.cpp:19: undefined reference to `R_chk_calloc' /tmp/RtmpEfnBsm/R.INSTALL17c3a7327d4fb/caTools/src/Gif2R.cpp:23: undefined reference to `R_chk_free' ... (many more R_* undefined references) For e1071: * installing to library ?/scratch3/BMC/co2/lib/R-3.1/x86_64-unknown-linux-gnu? * installing *source* package ?e1071? ... ** package ?e1...

...t/libjpeg/lib -L/opt/libpng/lib -L/opt/ncurses/lib -L/opt/zlib/lib -lncurses -ljpeg -lpng -lz -rpath /opt/libpng /lib:/opt/libjpeg/lib:/opt/ncurses/lib:/opt/gnu/lib:/usr/shlib:/opt/zlib /lib:/opt/R/lib -o MASS.so MASS.o lqs.o ld: Warning: Unresolved: exp fabs pow sqrt isnan Rf_error R_alloc Rprintf R_chk_calloc R_chk_free vmmin R_registerRoutines R_useDynamicSymbols log GetRNGstate PutRNGstate unif_rand R_rsort Rf_rPsort R_CheckUserInterrupt dqrsl_ dqrdc2_ make[3]: Leaving directory `/cluster/members/member0/tmp/R.INSTALL.OVYGvZ/VR/MASS/src' chmod: cannot access `/usr/ruby-deploy/swkits/RUBY/SOFTWARE/...

Changing from 0.64.1 to 0.64.2 is causing some dynamically-loaded code to crash with the message: ld.so.1: /usr/local/lib/R/bin/R.binary: fatal: relocation error: file /homef/jonm/glib/ggg/libs/glmm.so: symbol R_chk_calloc: referenced symbol not found (I've added carriage returns) what am I doing wrong? Jonathan -- Dr. Jonathan Myles e-mail:jonathan.myles at mrc-bsu.cam.ac.uk MRC Biostatistics Unit Tel. 01223 330371 Institute of Public Health FAX 01223 330388 University Forvie Site Robinson Way...

I have tried compiling R on a dec alpha running digital unix 4.0 and got the following: f77 -shared -o ts.so PPsum.o burg.o eureka.o filter.o pacf.o starma.o stl.o carray.o mburg.o myw.o qr.o -lUfor -lfor -lFutil -lm -lots -lm ld: Warning: Unresolved: R_alloc R_NaReal R_IsNA R_IsNaNorNA R_chk_calloc R_chk_free Rf_error vmaxget vmaxset dqrdc2_ dqrcf_ mkdir ../../../../library/ts/libs gmake[4]: Leaving directory `/home/ming/R-1.0.0/src/library/ts/src' gmake[3]: Leaving directory `/home/ming/R-1.0.0/src/library/ts' gmake[3]: Entering directory `/home/ming/R-1.0.0/src/library/profile'...

...;> /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': >> (.text+0x20): undefined reference to `main' >> Gif2R.o: In function `imwritegif': >> /tmp/RtmpEfnBsm/R.INSTALL17c3a7327d4fb/caTools/src/Gif2R.cpp:19: undefined reference to `R_chk_calloc' >> /tmp/RtmpEfnBsm/R.INSTALL17c3a7327d4fb/caTools/src/Gif2R.cpp:23: undefined reference to `R_chk_free' >> ... (many more R_* undefined references) >> >> For e1071: >> >> * installing to library ?/scratch3/BMC/co2/lib/R-3.1/x86_64-unknown-linux-gnu? &g...

....o runfunc.o > /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': > (.text+0x20): undefined reference to `main' > Gif2R.o: In function `imwritegif': > /tmp/RtmpEfnBsm/R.INSTALL17c3a7327d4fb/caTools/src/Gif2R.cpp:19: undefined reference to `R_chk_calloc' > /tmp/RtmpEfnBsm/R.INSTALL17c3a7327d4fb/caTools/src/Gif2R.cpp:23: undefined reference to `R_chk_free' > ... (many more R_* undefined references) > > For e1071: > > * installing to library ?/scratch3/BMC/co2/lib/R-3.1/x86_64-unknown-linux-gnu? > * installing *source*...

Hi R-devel, I'm trying to get R 3.2.1 working on Haiku (an open source OS inspired by BeOS, not Linux based) on i586. With a few small changes to library paths and ifdefs I am able to get a seemingly working R binary. The build process stops with the 'tools' package. The last lines from make are below. Does anyone have any tips? I'm rather new to debugging at this low level. Are

If anyone has a few extra CPU cycles to spare, I'd appreciate it if you could verify a problem that I have encountered. Run the code below and tell me if it crashes your R before completion. library(lme4) data(bdf) dump<-sapply( 1:50000, function(i) { fm <- lme(langPOST ~ IQ.ver.cen + avg.IQ.ver.cen, data = bdf, random = ~ IQ.ver.cen | schoolNR); cat("

...ksmooth.o loessc.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o -L/soft/readline/v4.2.1/lib -lreadline -ltermcap -lm -lUfor -lfor -lFutil -lots -lm_c32 -lmld -lexc ld: Warning: Unresolved: R_registerRoutines R_NaReal Rf_error Rf_warning R_alloc R_chk_calloc R_chk_free rwarn_ interv_ d1mach_ dsvdc_ dqrsl_ dqrdc_ ddot_ idamax_ dnrm2_ dblepr_ intpr_ R_finite Rprintf REprintf R_pow Rf_fsign dpbsl_ dpbfa_ mkdir -p -- ../../../../library/modreg/libs gmake[5]: Leaving directory `/soft/R/R-1.5.1/src/library/modreg/src' gmake[4]: Leaving directory `/soft/R...