search for: presnell

...) of mailing list "foo".. Please *do* post to "R-help" , "R-devel", and *NOT* to "owner-...." ! Martin Maechler = current owner-r-... ------- start of forwarded message ------- Message-ID: <14523.12854.325524.644966@flounder.stat.ufl.edu> Reply-To: presnell@stat.ufl.edu From: Brett Presnell <presnell@stat.ufl.edu> To: owner-r-devel@stat.math.ethz.ch Subject: Feature request for read.table Date: Mon, 28 Feb 2000 21:43:02 -0500 (EST) I've discovered Ripley's relevel function, but I'm still wondering what people might think of the idea...

...s Division, Walter and Eliza Hall Institute of Medical Research, 1G Royal Parade, Parkville, Vic 3052, Australia. smyth at wehi.edu.au http://www.wehi.edu.au http://www.statsci.org/smyth > Date: Tue, 15 Mar 2011 12:17:46 +0100 > From: peter dalgaard <pdalgd at gmail.com> > To: Brett Presnell <presnell at stat.ufl.edu> > Cc: r-devel at r-project.org > Subject: Re: [Rd] Standardized Pearson residuals > > > On Mar 15, 2011, at 04:40 , Brett Presnell wrote: > >>>> Background: I'm currently teaching an undergrad/grad-service course >>>> f...

...mal). 2. The help for quantile() function (in base) refers to the function ecdf(), but doesn't mention that it is in package stepfun (which is not loaded by default). It would be helpful if it did. 3. There's a typo in the help for optim(): "comprehansive". -- Brett Presnell Department of Statistics University of Florida http://www.stat.ufl.edu/~presnell/ Version: platform = sparc-sun-solaris2.6 arch = sparc os = solaris2.6 system = sparc, solaris2.6 status = Patched major = 1 minor = 5.0 year = 2002 month = 05 day = 11 language = R Search Path: .GlobalE...

Dear All, We are about to purchase the second edition of Agresti's "Categorical Data Analysis" (my old copy of the first ed. of that wonderful book is falling apart). I would appreciate suggestions about other comparable books which, if possible, have examples using R/S code (instead of SAS). Thanks, Ram?n -- Ram?n D?az-Uriarte Bioinformatics Unit Centro Nacional de

{again a message that was sent to owner-r-help (which is me, currently) why on earth ???!??!? reply to R-help or the original sender Brett Presnell; } I'm teaching a categorical data analysis course this term, and a minor "problem" has resurfaced that I have often thought about before. This applies equally to Splus I suppose, but my undergrads aren't using Splus. It seems natural to read/represent a contingency table as a...

Is there any reason that rstandard.glm doesn't have a "pearson" option? And if not, can it be added? Background: I'm currently teaching an undergrad/grad-service course from Agresti's "Introduction to Categorical Data Analysis (2nd edn)" and deviance residuals are not used in the text. For now I'll just provide the students with a simple function to use, but I

...? --please do not edit the information below-- Version: platform = sparc-sun-solaris2.6 arch = sparc os = solaris2.6 system = sparc, solaris2.6 status = major = 1 minor = 1.1 year = 2000 month = August day = 15 language = R Search Path: .GlobalEnv, Autoloads, package:base -- Brett Presnell Department of Statistics University of Florida -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body&quot...

...x) class(x) <- NULL val <- NextMethod("[") class(val) <- cl val }) print.paragraphs <- function(x, ...) { for (i in 1:(length(x))) { cat(x[[i]], sep="\n") cat("\n") } invisible(x) } @ %def -- Brett Presnell Department of Statistics University of Florida

...ber ever seeing this come up on the list, so what am I missing? In case it matters, I'm running R 0.99.0 on both platforms (I guess I'll be upgrading the Solaris side this weekend). The version of Win95 is several years old (mid 1996, version 4.00.950a it says). Solaris is 2.6. -- Brett Presnell Department of Statistics University of Florida (presnell at stat.ufl.edu) -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe"...

I'm trying to use the vcd package to produce mosaic plots for my class notes, written in Sweave and using the LaTeX's beamer document class. For projecting the notes in class, I use a dark background with light foreground colors. It's easy enough to change the defaults for R's standard graphics to match my color scheme (using the fg, col.axis, col.lab, col.main, and col.sub

...sewhere. I notice that there is already some underscore checking going on in configure and in places like Rdynload.c. Any suggestions are welcome. Am I missing anything? To save typing for anyone that want's to try this at home, I've appended a simple test case below. -- Brett Presnell Department of Statistics University of Florida http://www.stat.ufl.edu/~presnell/ dog1.f: subroutine dog_dog(x,y,z) implicit none double precision x,y,z z = x+y return end dog2.f: subroutine dogidog(x,y,z) implicit none double precision x,y...

Hello, I have found a problem with using the glm function with a gamma family. I have a vector of data, assumed to be generated by a gamma distribution. The parameters of this gamma distribution are estimated in two ways (i) using the glm() function, (ii) "by hand", using the optim() function. I find that the -2*likelihood at the maximum found by (i) is substantially larger than that

Hi I am using R for logistic regression and finding it very useful. However, I wondered if anyone could point me to any course or notes on this subject using R. All help most welcome. Stephen -- Internal Virus Database is out-of-date. Checked by AVG Anti-Virus. [[alternative HTML version deleted]]

...t;? Ideally I would like to be able to turn annotation off and on for individual code chunks, or maybe better, to annotate only named chunks. Are either of these things easily done? Is there some way to figure out this sort of thing without reading through the source code in Sweave.R? -- Brett Presnell Department of Statistics University of Florida

...ttp://stat-computing.org/newsletter/issues/scgn-16-2.pdf). Within the next days he kindly collaborated with the manufacturer of our screen reader and implemented a blinking cursor in the R-GUI. My student installed R-devel 2.12.0 as suggested and is happily using R with her screenreader. - Brett Presnell (presnell at stat.ufl.edu) suggested R + Emacs + ESS + Emacspeak <URL:http://emacspeak.sourceforge.net/> - Roopakshi Pathania [r_akshi_tgk at yahoo.com] suggested using R in Linux, where 2 screen readers (Speakup for text console, Orca for Gnome) are available. For Windows she suggested NVD...

I have just committed some code to the r-devel branch to implement the Rao efficient score test. This is asymptotically equivalent to the LRT, but there is some indication that it might have better properties in smaller samples since it is based more directly on the distribution of the sufficient sums under the null hypothesis (e.g., if you have a divergent fit to the model under the alternative,

..., some of the simpler changes that he made seem to be needed just to cleanup the code. Would it be useful if a number of us began using his version as an informal test? After discovering this bug earlier today, I have already begun to do so and so far have not encountered any problems. -- Brett Presnell Department of Statistics University of Florida http://www.stat.ufl.edu/~presnell/ Version: platform = i686-pc-linux-gnu arch = i686 os = linux-gnu system = i686, linux-gnu status = Under development (unstable) major = 1 minor = 5.0 year = 2002 month = 03 day = 27 language = R Search P...

...I just paste them from my editor. Thanks for any help Fred Linux debian potato R 1.5.0 here below, the file MyStuff ----------------------------- "adjresid" <- function(tab) { # calcul des residus normes sur un tableau de contingence # adjusted Pearson residuals # Brett Presnell <presnell at stat.ufl.edu> # tot <- sum(tab) rp <- apply(tab, 1, sum) / tot cp <- apply(tab, 2, sum) / tot mu <- tot * ( rp %o% cp ) norm(tab - mu) / sqrt( mu * ( (1 - rp) %o% (1 - cp) ) ) } "twoWay" <- function(x=NA, y=NA, userDefined=NA ) { # ada...

I apologize in advance if this is the wrong forum for this report/request, and for the fact that I have not read the code for ftable.formula in any detail. >From reading the documentation for ftable.formula, I expected that the following two calls to ftable would produce the same results: data(UCBAdmissions) ftable(UCBAdmissions, row.vars = "Dept", col.vars = c("Gender",

...least --a compatible one. * PR# 747 * Subject: Bug in args with no defaults From: dmurdoch@pair.com (Duncan Murdoch) Date: Sun, 26 Nov 2000 20:14:30 GMT --Probably not a bug, but a logical consequence of "missing" semantics. * PR# 758 * Subject: Inconsistency, possibly a bug? From: Brett Presnell <presnell@stat.ufl.edu> Date: Mon, 4 Dec 2000 19:26:32 -0500 (EST) --Fixed for 1.2.0 in the sense that lm/glm are now consistent, but would one want --it the other way around? * PR# 762 * Subject: nmath bug From: spoon <spoon@hilbert.maths.utas.edu.au> Date: Fri, 8 Dec 2000 18:29:22 +11...