search for: pheatmap

Dear R Community, I tried to generate heatmap for a matrix of 1500 columns by 106 rows using the following R script: > pheatmap(tf.vs.DE.1.removeAllZeroCol, fontsize=3,border_color=NA) and got the graph (as attached Fig 1) Since the column labels appear very crowded, I tried to increase the cellwidth to stretch the graph horizontally. The idea was to show the graph section by section, but with clear/readable column labels...

> On Sep 18, 2017, at 9:26 AM, Fix Ace via R-help <r-help at r-project.org> wrote: > > Dear R Community, > I tried to generate heatmap for a matrix of 1500 columns by 106 rows using the following R script: >> pheatmap(tf.vs.DE.1.removeAllZeroCol, fontsize=3,border_color=NA) > and got the graph (as attached Fig 1) > > Since the column labels appear very crowded, I tried to increase the cellwidth to stretch the graph horizontally. The idea was to show the graph section by section, but with clear/readable...

When plotting a heatmap with heatmap.2 the shortest euclidean distance cluster is plotted in the top left corner of the heatmap <http://r.789695.n4.nabble.com/file/n4651430/heatmap.2.jpeg> when plotting the same data with pheatmap the very same cluster is in the bottom right corner <http://r.789695.n4.nabble.com/file/n4651430/pheatmap.jpeg> I am just wondering what I would need to change in my pheatmap code to have the same orientation as with heamap.2 (eg the ? Any comments much appreciated. Thanks, DKV --...

...ible global function definition for 'new' Undefined global functions or variables: as new Consider adding 3) * checking DESCRIPTION meta-information ... NOTE Packages listed in more than one of Depends, Imports, Suggests, Enhances: 'e1071' 'nlme' 'openxlsx' 'pheatmap' 'RColorBrewer' 'R.rsp' A package should be listed in only one of these fields. Can anybody help me to short out those problem please ? Thank you very much. regards Pijush [[alternative HTML version deleted]]

...ingencies (0.9), lubridate (1.1.0), Mangrove (1.1), matrixStats (0.4.4), maxLik (1.1-2), meboot (1.1-4), MHadaptive (1.1-7), miRtest (1.2), mondate (0.9.9.03), multcomp (1.2-12), multitable (1.3), MVA (1.0-3), networkDynamic (0.2-2), np (0.40-13), npRmpi (0.40-13), openair (0.5-23), OpenCL (0.1-2), pheatmap (0.6.1), pks (0.2-0), planar (1.2), plotGoogleMaps (1.2), PowerTOST (0.9-4), ppstat (0.8), pROC (1.5.1), PTAk (1.2-5), qgraph (1.0.2), qtl (1.23-16), rbamtools (2.0), rconifers (1.0.7), RcppArmadillo (0.2.36), readBrukerFlexData (1.2.5), readBrukerFlexData (1.2.7), readMzXmlData (2.2.1), REGENT (1....