search for: packageversion

Hi, I received a bug report from a French user who told me there was something wrong with the function packageVersion(), but packageDescription() worked well. Below is the session info; I'm not sure if other French users can reproduce the error message: > packageVersion('base') Erreur : sp?cification de version incorrecte base > sessionInfo() R version 2.12.1 (2010-12-16) Platform: i386-apple-da...

...em installing any other CRAN packages, but installing package "gbm" fails due to: *** installing help indices ** building package indices ... ** testing if installed package can be loaded Error : .onAttach failed in attachNamespace() for 'gbm', details: call: NULL error: 'packageVersion' is not an exported object from 'namespace:utils' ERROR: loading failed In the utils namespace I have > utils::package [tab-tab] utils::package.contents utils::package.skeleton utils::packageDescription utils::packageStatus but no utils::packageVersion. I can install gbm on my...

...t; > Hi Matthew, Unfortunately, the load of that library fails (it builds successfully). I'm currently looking into why. Error output looks something similar to: > library(data.table) Error in .makeMessage(..., domain = domain, appendLF = appendLF) : could not find function "packageVersion" Error : .onAttach failed in 'attachNamespace' Error: package/namespace load failed for 'data.table' I googled around a bit and there is mention of a bug in packageVersion but there was no solution that I found. Is this something that is easily overcome? Thanks, Jesse

I've made a small enhancement to R that would help developers better control what versions of code we're using where. Basically, to load a package in R, one currently does: library(whateverPackage) and with the enhancement, you can ensure that you're getting at least version X of the package: library(whateverPackage, version=3.14) Reasons one might

...rk in advance, but thought I would send this along to see if anyone else was seeing this. I am having some sort of ggplot2/plyr/very-recent-R-devel dependency issues. Just installed R Under development (unstable) (2014-09-01 r66509) -- "Unsuffered Consequences" from source. > packageVersion("ggplot2") [1] ?1.0.0? > packageVersion("plyr") [1] ?1.8.1? library(plyr) works but then I get: library(ggplot2) Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : namespace ?plyr? 1.8.1 is being loaded, but >= 1.7.1 is required Error: pack...

hello, if i load the RSQLite package in addition to the RPostgreSQL package, i get various errors when trying to use RPostgreSQL functions. here is an example transcript showing one such error: ========================================================== R version 2.15.0 (2012-03-30) [...] > packageVersion('RPostgreSQL') [1] 0.3.2 > packageVersion('RSQLite') [1] 0.11.1 > library(RPostgreSQL) Loading required package: DBI > dbDriver('PostgreSQL') <PostgreSQLDriver:(32540)> > library(RSQLite) > dbDriver('PostgreSQL') Error in function (classes,...

...rade -y' but not required ## Thanks to my colleague Paul Hoffman for the core of this example ## now have Matrix 1.6.0 because r2u and CRAN remain current but we can install an older Matrix remotes::install_version('Matrix', '1.5.1') ## we can confirm that we have Matrix 1.5.1 packageVersion("Matrix") ## we now install SeuratObject from source and to speed things up we first install the binary install.packages("SeuratObject") # in this container via bspm/r2u as binary ## and then force a source installation (turning bspm off) _while Matrix is at 1.5.1_ if (requir...

...dNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): ?namespace ?rlang? 0.4.0 is being loaded, but >= 0.4.2 is required > library ( ggplot2 ) Error: package or namespace load failed for ?ggplot2?: ?.onLoad failed in loadNamespace() for 'pillar', details: ? call: utils::packageVersion("vctrs") ? error: there is no package called ?vctrs? > ? ? ??????????????????????????????????? ? ???? orlandomontreal at yahoo.com??????? ? ? [[alternative HTML version deleted]]

...instead of "i.e." would seem more appropriate. - But more importantly, is repos = NULL really supported for update.packages? I wonder where I need to place the local files for this to work. I tried to put them in the current working directory but that didn't work: > packageVersion("BSgenome") [1] ?1.27.1? > dir() [1] "BSgenome_2.0.0.tar.gz" > update.packages(repos=NULL) This description of the 'repos' arg looks more like a copy/paste from the man page for install.packages that needed some edit. - Another copy/past...

hi, I use R - 2.15(32bit), and want to make a code to clear a console. Actually, I used to run following code to do that but after update the version of R from 2.14 to 2.15, it doesn't work. cls <- function (t) { require(RDCOMClient) wsh <- COMCreate("Wscript.Shell") wsh$SendKeys("\f") invisible(wsh) } cls() or cls <-

...gt; Class="rcfdpsuperclass", > fields = list( > RcfpdVersion = "character"), > methods = list( > initialize = function(){ > 'Populates fields with defaults and lock as appropriate' > initFields( > RcfpdVersion = as.character(packageVersion("RCFPD"))) > lockBinding(sym="RcfpdVersion",env=.self) > })) And a second one like this: > sequencesuperclass <- setRefClass( > Class="sequencesuperclass", > fields = list( > test="character"), > contains="rcfpds...

...year 2011 month 12 day 22 svn rev 57956 language R version.string R version 2.14.1 (2011-12-22) > packageVersion("contrast") [1] ?0.16? > packageVersion("nlme") [1] ?3.1.102? Regards, -- Colm G. Connolly, Ph. D. Dept of Psychiatry University of California, San Diego 9500 Gilman Dr. #0738 La Jolla, CA 92093-0738

...er the current date and time. === Later, when desirous of exactly recreating this analysis === * read the (old) sessionInfo() into an R session * exit with failure if the running version of R doesn't match * compare the old sessionInfo to the currently available installed libraries (i.e. using packageVersion) * where there are discrepancies, install the required version of the package (without dependencies) into new library (named after the old sessionInfo RDS file) Then the analyst should be able to put the new library into the front of .libPaths and run the analysis confident that the same version o...

Why doesn't this work? x = zoo(1:5, as.Date('2001-01-01')+1:5) x[as.Date('2001-01-05')] x[as.Date('2001-01-05')] = 0 x I think this is especially bad because it doesn't cause an error. It lets you do something to x, but then you can't see x again to see what it did. [[alternative HTML version deleted]]

....rpm openssl-devel-0.9.6 m-1.aix5.1.ppc.rpm openssl-doc-0.9.6m-1.aix5.1.ppc.rpm error: failed dependencies: /bin/sh is needed by openssl-0.9.6m-1 /usr/bin/perl is needed by openssl-0.9.6m-1 libc.a(shr.o) is needed by openssl-0.9.6m-1 I have alot of Machines running this ssl Packageversion, but all they were Installed from Scratch. If i force the Package Installation, the ssh-keygen and sshd want running. ( without Errormessages ) I have compiled my ssh Package with this SSL Version and: blibpath=/usr/lib:/lib:/usr/local/lib:/opt/freeware/lib export blibpath ./configure --with-ssl...

Dear List, Here is an example of survival data in counting process format (detailed record of each day) > data[data$Id == 11,] # extracted one person's record Id Event Fup Start Stop sex Drug1 601 11 0 6 0 1 0 0 602 11 0 6 1 2 0 0 603 11 0 6 2 3 0 0 604 11 0 6 3 4 0 0 605 11 0 6 4 5 0 1 606

...de the list using f(): f <- function () { for(pkg in installed.packages()[,"Package"]) { try( { exports <- parseNamespaceFile(pkg, R.home("library"))$exports if (any(dup <- duplicated(exports))) { cat(pkg, format(packageVersion(pkg)), ":", deparse(exports[dup]), "\n") } }, silent = TRUE) } } I suppose it should also check for duplicates in S3method component, etc. Bill Dunlap Spotfire, TIBCO Software wdunlap tibco.com

...function () > { > for(pkg in installed.packages()[,"Package"]) { > try( { > exports<- parseNamespaceFile(pkg, R.home("library"))$exports > if (any(dup<- duplicated(exports))) { > cat(pkg, format(packageVersion(pkg)), ":", deparse(exports[dup]), "\n") > } > }, silent = TRUE) > } > } > I suppose it should also check for duplicates in S3method component, etc. > > Bill Dunlap > Spotfire, TIBCO Software > wdunlap tibco.com >

...me requirements on other libraries in a <code>DESCRIPTION</code> file. Using RPM's file attributes and dependency generator support, these requirements can be added to packages automatically. These will use namespaced <code>Provides</code> of <code>R(packageName) = packageVersion</code> where <code>packageName</code> is the importable name of the package and <code>packageVersion</code> is the upstream version (note: upstream versions are often sanitized for Fedora since RPM cannot use dashes in versions.) R library metadata includes <code&g...

Dear all, I would like to use the apply or a similar function belonging to this family, but applying for each column (or row) but let say for each q columns. For example I would like to apply a function FUN for the first q columns of matrix X then for q+1:2*q and so on. If I do apply (X, 2, FUN) it applies for each column and not for every q columns. Is that possible with any similar function?