search for: nmf

...it does not work very well (when R is large) thus I try to use "try" to resolve. I put the try function in two cases: case1: put the try in front of the boot > c1.try<-try(boot(c1data, statistic = c1.fun, R=3999),silent=T) > c1.try [1] "Error in nls(formula = density ~ nmf(time, alpha, delta, psi, tau, gamma), : \n Convergence failure: false convergence (8)\n" attr(,"class") [1] "try-error" case2: put the try in front of the nls c1.nmf<-try(nls(density~nmf(time, alpha, delta, psi, tau, gamma), + algorithm="port"...

I am reading the Mining of Massive Datasets Book by Rajaraman and Ullman. It has a good explanation of Recommendation System at Chapter 9. But what are the relationship between 1) SVD (Singular Decomposition) 2) UV-Decomposition 3) NMF (Non-negative Matrix Factorization) In particular, it seems 2) and 3) can be very similar. Is it right? Thanks. -- View this message in context: http://r.789695.n4.nabble.com/SVD-UV-Decomposition-and-NMF-tp3208273p3208273.html Sent from the R help mailing list archive at Nabble.com. [[alterna...

The 'NMF' package implements a number of standard algorithms to perform Nonnegative Matrix Factorization. It also provides a flexible framework to easily test and develop new methods, as well as a layer to work with Bioconductor objects. The package is available from CRAN. Feedbacks are welcome. --...

The 'NMF' package implements a number of standard algorithms to perform Nonnegative Matrix Factorization. It also provides a flexible framework to easily test and develop new methods, as well as a layer to work with Bioconductor objects. The package is available from CRAN. Feedbacks are welcome. --...

I recently installed * on my firewall and that of a relative some miles away. I route sipphone (kphone and x-lite) calls from deep within the backbone (two layers of firewall) on each end to the other. Works fine between @200Mhz pentium doorstop linux boxes (even w/2.4 kernel).The problem of course is the output of the speaker at the other end is picked up by the microphone (confirmed by

Hi all, I'm needing/trying to save linux in my company. I have files in format .nmf (from a company called Nice) to listen. Don't have open or proprietary codecs for linux. I can only to the Nice Player. <Ubuntu Desktop> I've tried: 1- copy of folder installed in the windows for linux ubuntu desktop and run "wine nice.exe" and dont' run 2- run the pac...

...nd sometimes 2 in a row) at exactly the same time I see the following errors Does anyone have any suggestions / ideas ? Thanks Ruairi Sep 24 11:56:30 asterisk01 -- MARK -- Sep 24 11:59:02 asterisk01 ntpd[3615]: synchronized to 172.16.22.60, stratum 4 Sep 24 11:59:28 asterisk01 kernel: wcte12xp: NMF workaround on! Sep 24 11:59:28 asterisk01 kernel: wcte12xp: Setting yellow alarm Sep 24 11:59:29 asterisk01 kernel: wcte12xp: NMF workaround off! Sep 24 11:59:34 asterisk01 kernel: wcte12xp: Clearing yellow alarm Sep 24 12:16:30 asterisk01 -- MARK -- Sep 24 12:17:01 asterisk01 /USR/SBIN/CRON[8325]:...

...ggestions I would like to do a bootstrap in a nonlinear model. But it fails to converge in most of time. (it did converge if I just use nls without boot). Thus, I use "try" function to resolve my problem. This following code is from Jinsong's suggestion. h1a.nls<-nls(density~nmf(time, alpha, delta, psi, tau, gamma),data=h1a, start=c(alpha=0.3, delta=0.08869, psi=1.26523, tau=3.93919, gamma=-1.41927)) h1a.data<-data.frame(h1a,res=resid(h1a.nls),fitted=fitted(h1a.nls)) h1a.fun<-function(data,i){ d<-data d$density<-d$fitted+d$res[i] try(upd...

...aph (0.5.4-1), intervals (0.13.3), ipw (1.0-6), laeken (0.1.3), LDheatmap (0.2-9), lme4 (0.999375-35), lmPerm (1.1-2), lordif (0.1-6), lpSolveAPI (5.5.2.0), magma (0.2.1-3), MCMCglmm (2.06), mondate (0.9.08.15), mondate (0.9.08.19.02), mratios (1.3.13), nacopula (0.4-3), nleqslv (1.7), nlt (2.1-1), NMF (0.5), pROC (1.3.1), qpcR (1.3-1), qpcR (1.3-0), qtl (1.18-7), qualityTools (1.01), R.utils (1.5.0), r4ss (1.10), rAverage (0.3-3), rbounds (0.5), RcmdrPlugin.HH (1.1-26), robCompositions (1.4.3), RPMG (2.0-0), RSEIS (2.4-4), rTOFsPRO (1.2), Runiversal (1.0.1), rwm (1.52), sdcMicro (2.6.5), sem (0....

...-devel has been very unstable recently, >> and it has been decided not to use it for the Fedora checks on R-devel. As >> you can see from the CRAN results pages (at least at the time of writing), >> packages >> >> ACMEeqtl BoSSA CNVassoc CorShrink GRANBase GenCAT GiANT NMF PlackettLuce >> ProFit ProFound RNAseqNet SIBERG antaresRead apcluster cherry clValid coloc >> colorhcplot entropart filematrix fuzzyforest fuzzyjoin glycanr hexbin loon >> nscancor ordinalgmifs penalized phangorn propr shiftR switchr tcgsaseq >> tileHMM tmod >> >&g...

...ds (FCS-homo and FCS-hetero). 2. cluster analysis of imputed data sets: six clustering methods are available (kmeans, pam, clara, hierarchical clustering, fuzzy c-means and gaussian mixture), but custom methods can also be easily used. 3. partition pooling: the set of partitions is aggregated using NMF based method. An associated instability measure is computed by bootstrap. Among applications, this instability measure can be used to choose a number of clusters with missing values. The package also offers several diagnostic tools for tuning the number of imputed data sets, for checking convergen...

...ds (FCS-homo and FCS-hetero). 2. cluster analysis of imputed data sets: six clustering methods are available (kmeans, pam, clara, hierarchical clustering, fuzzy c-means and gaussian mixture), but custom methods can also be easily used. 3. partition pooling: the set of partitions is aggregated using NMF based method. An associated instability measure is computed by bootstrap. Among applications, this instability measure can be used to choose a number of clusters with missing values. The package also offers several diagnostic tools for tuning the number of imputed data sets, for checking convergen...

...in several packages, e.g. people writing proc.time(<expression>) where system.time() was more plausible, misusing nargs() (if you want the number of args in ..., use length(list(...)), not nargs(...)), using on.exit(par=opar) not on.exit(par(opar)), and so on. Specifically CRAN packages NMF, RobAStBase, TTR, aroma.light, catspec, gvlma, mvbutils, orloca, orloca.es, sm and staRt now fail in R-devel (and also some that use them). -- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford,...

Where would be the correct place to put nmf and nexe files in the directory structure of a rails app? -- You received this message because you are subscribed to the Google Groups "Ruby on Rails: Talk" group. To post to this group, send email to rubyonrails-talk-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org To unsubscribe fro...

...cided not to use it >> ??????????? for the Fedora checks on R-devel. As you can see from the >> ??????????? CRAN results pages (at least at the time of writing), >> packages >> >> ??????????? ACMEeqtl BoSSA CNVassoc CorShrink GRANBase GenCAT GiANT >> ??????????? NMF PlackettLuce ProFit ProFound RNAseqNet SIBERG >> ??????????? antaresRead apcluster cherry clValid coloc colorhcplot >> ??????????? entropart filematrix fuzzyforest fuzzyjoin glycanr hexbin >> ??????????? loon nscancor ordinalgmifs penalized phangorn propr shiftR >> ?????????...

...branch used by R-devel has been very unstable > recently, and it has been decided not to use it for the Fedora checks > on R-devel. As you can see from the CRAN results pages (at least at > the time of writing), packages > > ACMEeqtl BoSSA CNVassoc CorShrink GRANBase GenCAT GiANT NMF > PlackettLuce ProFit ProFound RNAseqNet SIBERG antaresRead apcluster > cherry clValid coloc colorhcplot entropart filematrix fuzzyforest > fuzzyjoin glycanr hexbin loon nscancor ordinalgmifs penalized phangorn > propr shiftR switchr tcgsaseq tileHMM tmod > > then give ERRORs...

...e recently, and it has been decided not to use it > for the Fedora checks on R-devel. As you can see from the > CRAN results pages (at least at the time of writing), packages > > ACMEeqtl BoSSA CNVassoc CorShrink GRANBase GenCAT GiANT > NMF PlackettLuce ProFit ProFound RNAseqNet SIBERG > antaresRead apcluster cherry clValid coloc colorhcplot > entropart filematrix fuzzyforest fuzzyjoin glycanr hexbin > loon nscancor ordinalgmifs penalized phangorn propr shiftR > switchr tcgsa...

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

...(flags is 4099) Mar 29 14:19:18 sepbx kernel: TE110P: Span configured for CCS/HDB3/CRC4 Mar 29 14:19:18 sepbx kernel: Calling startup (flags is 4099) Mar 29 14:19:18 sepbx kernel: Registered tone zone 16 (Sweden) Mar 29 14:19:18 sepbx zaptel: Running ztcfg: succeeded Mar 29 14:19:19 sepbx kernel: NMF workaround on! Mar 29 14:19:19 sepbx kernel: wcte1xxp: Setting yellow alarm This is from more /proc/zaptel/1 Span 1: WCT1/0 "Digium Wildcard TE110P T1/E1 Card 0" HDB3/CCS/CRC4 RECOVERING 1 WCT1/0/1 Clear 2 WCT1/0/2 Clear 3 WCT1/0/3 Clear 4 WCT...

I got overzealous with snapshot creation. Every 5 mins is a bad idea. Way too many. What''s the easiest way to delete the empty ones? zfs list takes FOREVER