Displaying 6 results from an estimated 6 matches for "ndups".
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2020 Mar 28
0
[klibc:update-dash] dash: eval: Use the correct expansion mode for fd redirection
Commit-ID: 60413cc28c9b0b423e89fefff476d39c1926d6da
Gitweb: http://git.kernel.org/?p=libs/klibc/klibc.git;a=commit;h=60413cc28c9b0b423e89fefff476d39c1926d6da
Author: Herbert Xu <herbert at gondor.apana.org.au>
AuthorDate: Mon, 19 Nov 2018 18:00:32 +0800
Committer: Ben Hutchings <ben at decadent.org.uk>
CommitDate: Sat, 28 Mar 2020 21:42:55 +0000
[klibc] dash: eval: Use the
2004 Nov 12
0
Design Matrix
...e1.spot) and the second slide(mice2.spot) are
dye-swap. There is no common reference. There are 3 replicated spots of
each gene on each array (384 genes in total).
MA is an object of class marrayNorm, below is what I did.
>design <- c(1,-1,1,-1,1)
>cor <- duplicateCorrelation(MA,design,ndups=3)
>cor$consensus.correlation
[1] 0.506
>fit <- lmFit(MA,design,ndups=3,correlation=cor$consensus.correlation)
>fit <- eBayes(fit)
>topTable(fit,n=20,adjust="fdr")
The result is,
ID M A t P.Value B
348 -1.3 10.8 -3.98 0.577 -4.47
371 -1.91 11.5 -3.36 0.577 -4.47
17...
2007 Aug 23
0
[git patch] klibc dash 0.5.4 update
hello hpa,
please pull for the dash update
git pull git://brane.itp.tuwien.ac.at/~mattems/klibc.git maks
with this changes:
Alexey Gladkov (1):
Check return code for getgroups and fwrite
Herbert Xu (17):
Remove unnecessary truncation in _STPUTC
Always call conv_escape_str in echocmd
Fix \c spillage across echo commands
Release 0.5.3.
Make eval with empty
2007 Jul 30
0
problems in limma
...0
[12,] -1 0 0
[13,] 0 -1 1
[14,] 0 -1 1
[15,] 0 -1 1
[16,] 0 -1 1
[17,] 0 -1 1
[18,] 0 -1 1
> i<-MA.p$genes$Status=="gene"
> corMA.pi<-duplicateCorrelation(MA.p[i,],design,ndups=2)
Warning messages:
1: Too much damping - convergence tolerance not achievable in:
glmgam.fit(dx, dy, start = start, tol = tol, maxit = maxit, trace = trace)
2: Too much damping - convergence tolerance not achievable in:
glmgam.fit(dx, dy, start = start, tol = tol, maxit = maxit, trace = trace)...
2007 Mar 02
0
LIMMA contrast.matrix
...ml16med.spot CD4 DN
ml17med 17 ml17med.spot DN CD4
> design <- modelMatrix(targets, ref="CD4")
Found unique target names:
CD4 CD8 DN
> design
CD8 DN
ml12med 1 0
ml13med -1 0
ml14med 1 -1
ml15med -1 1
ml16med 0 1
ml17med 0 -1
> fit <- lmFit(MA, design, ndups=2)
> contrast.matrix <-
cbind("CD8-CD4"=c(1,0),"DN-CD4"=c(0,1),"CD8-DN"=c(1,-1))
> rownames(contrast.matrix) <- colnames(design)
> contrast.matrix
CD8-CD4 DN-CD4 CD8-DN
CD8 1 0 1
DN 0 1 -1
*******************************************************...
2010 May 04
2
sched provider
Hi All,
I used the following script from the dtrace manual to measure how long a particular process runs on the cpu. Modified it to look at the exact timestamps:
[i]
sched:::on-cpu
{
self->ts = timestamp;
printf("on=%d\n", self->ts)
}
sched:::off-cpu
/self->ts/
{
printf("off=%d\n", timestamp)
self->ts = 0;
}
[/i]
The output looks like this:
[i]on=24591
off=24603