search for: narea

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2012 Oct 16
2
Penalty function constrained optimization
...s regarding how to implement the penalty function so it works over all areas? i.e. that the sum of each fleet's effort is 9 across all areas? The code with areas is below. In the obj function, the ??? denote the start of the penalty function and the place where I need help.... *** nfleets<-2 nareas<-2 M<-1 M<-array(M,dim=c(nfleets,nareas)) N<-1000 cost<-c(30,30) cost<-array(cost,dim=c(nfleets,nareas)) Price<-2 Price<-array(Price,dim=c(nfleets,nareas)) q<-array(0.1,dim=c(nfleets,nareas)) f<-1 f<-array(f,dim=c(nfleets,nareas)) init.eff<-array(3,dim=c(nfleets...
2017 Nov 27
0
How to extract coefficients from sequential (type 1) ANOVAs using lmer and lme
...s like that the coefficients arefrom ANOVA with ?marginal? (type III sums of squares). I have tried both lme (nlmepackage) and lmer (lme4 + lmerTEST packages). Examples of the results arebelow: ? ? > #mixed-effect modelusing lme >model.short.psme.bulk.d13c.3 <- lme(isotopebulk_add_log ~narea+sampleheight, random= ~1|tree, +??????????????????????????? data =ht_data_short_psme, na.action = na.exclude) > ? >anova(model.short.psme.bulk.d13c.3, type ="sequential") ???????????? numDF denDF?? F-value p-value (Intercept)????? 1????3 1840.5678? <.0001 narea??????????...
2017 Nov 29
0
How to extract coefficients from sequential (type 1), ANOVAs using lmer and lme
...with ?marginal? (type III sums of squares). I have tried both lme (nlmepackage) and lmer (lme4 + lmerTEST packages). Examples of the results arebelow: > <snip> > Ibelieve the results from summary() are for ?marginal? instead of ?sequential?ANOVA because the p-value (i.e., 0.237 for narea) in summary are identical tothose in tables from ?marginal?. I also used lmer in the lme4 pacakge to findthe same results (summary() results look like from ?marginal?). > > > Cananybody tell me how to get coefficients for ?sequential? ANOVAs? Thank you. >
2004 Dec 18
4
variables - data-structure
dear R-friends, i`ve got a large dataset of vegetation-samples with about 500 variables(=species) in the following format: 1 spec1 1 spec23 1 spec54 1 spec63 2 spec1 2 spec2 2 spec253 2 spec300 2 spec423 3 spec20 3 spec88 3 spec121 3 spec200 3 spec450 . . this means: sample 1 (grassland) with the species (=spec) 1, 23, 54, 63 is it possible to get a following data-structure for further
2017 Dec 01
0
How to extract coefficients from sequential (type 1), ANOVAs using lmer and lme
.... I have tried both lme (nlmepackage) and lmer (lme4 + > lmerTEST packages). Examples of the results arebelow: >> > > > <snip> > > >> Ibelieve the results from summary() are for ?marginal? instead of > ?sequential?ANOVA because the p-value (i.e., 0.237 for narea) in summary > are identical tothose in tables from ?marginal?. I also used lmer in the > lme4 pacakge to findthe same results (summary() results look like from > ?marginal?). >> >> >> Cananybody tell me how to get coefficients for ?sequential? ANOVAs? > Thank you. >...
2008 Aug 02
3
Bubble plots
Is there a way to create a 'bubble plot' in R? For example, if we define the following data frame containing the level of y observed for 5 patients at three time points: time<-c(rep('time 1',5),rep('time 2',5),rep('time 3',5))
2008 Aug 05
0
P values in non linear regression and singular gradients using nls
...{ if(scale.method=="volume") main <- paste("Balloon Plot for ", paste(xnames, collapse=", "), " by ", paste(ynames, collapse=", "), ".\nArea is proportional to ", zlab, ".", sep='') else main <- paste("Balloon Plot for ", paste(ynames, collapse=", "), " by ", paste(ynames, collapse=", "),...