search for: nakagawa

...s for overdispersed counterparts - using rnbinom() for Poisson and rbetabinom() for binomial. Could anyone share functions to do this? Or please share some tips for modifying existing functions to achieve this. Thank you very much for your help and time Shinichi ____________________ Shinichi Nakagawa, PhD (Lecturer of Behavioural Ecology) Department of Zoology University of Otago 340 Great King Street P. O. Box 56 Dunedin, New Zealand Tel: +64-3-479-5046 Fax: +64-3-479-7584 http://www.otago.ac.nz/zoology/staff/academic/nakagawa.html

...is? I am guessing formula would change depending on what distribution you use and what link function as well? I want to calculate icc from GLMM with Poisson with log link function and also binomial with logit function. Could anybody help me please? Many thanks for your help Shinichi -- Shinichi Nakagawa Dept of Animal & Plant Sciences University of Sheffield Tel: 0114-222-0113 Fax: 0114-222-0002

...r sample size I have in different levels (in a fixed factor), I get the same degree of freedom for t-tests. Why is this? Is this how mixed-effects model work? Does this mean that if I have unbalanced design, results from lme are likely to be wrong? Thank you for your help Shinichi -- Shinichi Nakagawa Department of Animal & Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK Tel: +44-114-222-0064 Fax: +44-114-222-0002

...(1|Socialgroup)+(1|Year)+(1|Tattoo)),REML=FALSE, data=propspec) pss<-standardize(ps,standardize.y = FALSE) psdrg<-dredge(pss) summary(model.avg(get.models(psdrg,subset=delta<2))) #-------------------------------------------------------------------------------------# REf -Grueber, C.E., Nakagawa, S., Laws, R.J. & Jamieson, I.G. (2011) Multimodel inference in ecology and evolution: challenges and solutions. Journal of evolutionary biology, 24, 699-711. Any help would be much appreciated Regards Andrew Robertson PhD student Centre for Ecology and Conservation University of Exeter, Cor...

...using an lmer model and trying to use parametric bootstrapping for the confidence intervals. My model is like this: model<-lmer(y~A+B+(1|C/D)+(1|E),binomial) where E is the individual level for consistency analysis, A-D are other fixed and random effects that I have to control for. Following Nakagawa and Scheilzeth I can work out the repeatability estimate using the following (as it is a binomial and the residual variance is fixed at 1). attr(lme4::VarCorr(model)$E, "stddev")^2 / (1*(pi^2)/3 + attr(lme4::VarCorr(model)$E, "stddev")^2 + attr(lme4::VarCorr(model)$C, "st...

...installer crashes 33930 loader/Makefile.in not compatible with BSD make 33934 Ballistic game: mouse no longer works ---------------------------------------------------------------- Changes since 1.6-rc4: Akihiro Sagawa (1): po: Use English shell path names in Japanese locale. Akira Nakagawa (2): wine.desktop: Add Japanese title. po: Update Japanese translation. Alexandre Julliard (33): winebuild: Pass the -mcpu option to the C compiler also. gdi32: Fix off-by-one error in the extent of arcs when the size is even. gdi32: Don't load linked fonts only t...

...gin fails) 35035 HF pAppLoc (AppLocale) installer crashes due to unimplemented function apphelp.dll.ShimFlushCache 35039 Wine out-of-source tree build broken when specifying a full path to configure ---------------------------------------------------------------- Changes since 1.7.7: Akira Nakagawa (1): po: Update Japanese translation. Alexandre Julliard (11): configure: Add a rule to prevent rebuilding makedep when tools are disabled. makefiles: Only output tools directory dependencies when tools are enabled. makefiles: Don't make binaries depend on Makefile.in....

...enu, you can't run the game (Mac OS X only bug) 34968 Freespace becomes unresponsive and showing only black screen 34969 wininet: In Trackmania Nations Forever new online user registration fails ---------------------------------------------------------------- Changes since 1.7.6: Akira Nakagawa (1): advapi32: Remove extra comma. Alexandre Julliard (23): makefiles: Merge the relpath functionality into makedep. makefiles: Output clean rules for generated files from makedep. makefiles: Remove the no longer needed EXTRASUBDIRS variables. makefiles: Add a makedep...

Hi group, I found a module for adaptive kernel density estimation for Stata users, but unfortunetly I don't have access to Stata, can I find a similar approach using R? Thank u so much 4 ur time. [[alternative HTML version deleted]]