Displaying 6 results from an estimated 6 matches for "mzr".
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mvr
2016 Dec 21
1
different compilers and mzR build fails
I do this on a vanilla-clean R installation, simply:
> biocLite("mzR")
it pulls some deps in which compile fine, only mzR fails.
... meanwhile...
I grabbed devtools and comiled github master - still fails.
Should I attach build log? One should not send attachments
to the list.. I don't suppose?
On 21/12/16 17:06, Martin Morgan wrote:
> mzR is a Biocond...
2016 Dec 21
2
different compilers and mzR build fails
I'm not sure if I should bother you team with this,
apologies in case it's a bother.
I'm trying gcc 6.2.1 (from devtoolset-6) with R, everything
seems to work just fine, except for mzR.
Here is failed build:
g++ -m64 -shared -L/usr/lib64/R/lib -Wl,-z,relro -o mzR.so
cramp.o ramp_base64.o ramp.o RcppRamp.o RcppRampModule.o
rnetCDF.o RcppPwiz.o RcppPwizModule.o RcppIdent.o
RcppIdentModule.o ./boost/system/src/error_code.o
./boost/regex/src/posix_api.o ./boost/regex/src/fileite...
2016 Dec 21
0
different compilers and mzR build fails
mzR is a Bioconductor package, so better to ask on the Bioconductor
support forum
https://support.bioconductor.org
Oh, I see you did, and then the advice is to avoid cross-posting!
The missing .o files would have been produced in an earlier compilation
step; they likely failed in some way, so y...
2017 Apr 19
2
Default R-3.4.0 RC CXXFLAGS without -O2 on x86_64-linux-gnu with g++-5.4.0 causes WARNING from stl_list.h
...ly " -Wall", while?CFLAGS are happy with "-g -O2
-Wall"
This has an influence in at least one place
https://stat.ethz.ch/pipermail/bioc-devel/2017-April/010733.html
where we have WARNINGS in R CMD check from "Found ?abort?,?
possibly from ?abort? (C)" in packages xcms/mzR.
The abort() call is not coming from XCMS, but rather?
from the C++ code in the STL:
[...]
# 1770 "/usr/include/c++/5/bits/stl_list.h"
void _M_check_equal_allocators(list& __x) {
?if (_M_get_Node_allocator())
???__builtin_abort();
}
If we compile with -O2 optimisation, this ge...
2017 Apr 20
0
Default R-3.4.0 RC CXXFLAGS without -O2 on x86_64-linux-gnu with g++-5.4.0 causes WARNING from stl_list.h
...FLAGS are happy with "-g -O2
> -Wall"
>
> This has an influence in at least one place
> https://stat.ethz.ch/pipermail/bioc-devel/2017-April/010733.html
> where we have WARNINGS in R CMD check from "Found ?abort?,?
> possibly from ?abort? (C)" in packages xcms/mzR.
> The abort() call is not coming from XCMS, but rather?
> from the C++ code in the STL:
>
> [...]
> # 1770 "/usr/include/c++/5/bits/stl_list.h"
> void _M_check_equal_allocators(list& __x) {
> ?if (_M_get_Node_allocator())
> ???__builtin_abort();
> }...
2009 Jul 23
1
[PATCH server] changes required for fedora rawhide inclusion.
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zpOM;3&jW9wzX0D$F92_(?U4Nd)fy-k932IGKOGIcjb1~Ho5>iugQkq7!tjg}r#_4b
zUIm>1yoXK%-(z$V;=AZ%;3w!5$vGAAy>uG...