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Hi, We have recently published a paper on floating point accuracy analysis through Monte Carlo Arithmetic. We also released the open-source tool Verificarlo (https://github.com/verificarlo/verificarlo) that relies on LLVM for instrumenting floating point operations. Could you please add our paper to http://llvm.org/pubs/ ? Verificarlo: checking floating point accuracy through Monte...

...ce analysis to compare a community composition matrix to a matrix of sample spatial relationships and environmental variables. In order to parse out how much variance is explained purely by space (S/E) or the environment (E/S) I am using a conditional (partial) CCA. I want to test significance via Monte Carlo but I can not find a way to do this with a conditional CCA. I have been using vegan for the CCA and attempting to use ade4 to run a Monte Carlo. However, these two packages conflict when it comes to CCA. If I use vegan I can run a conditional CCA, and if I use ade4 I can do a Monte Carlo -...

Hello all, I would like to know what the difference is between chisq.test and fisher.test when using the Monte Carlo method with simulate.p.value=TRUE? Thank you -- View this message in context: http://r.789695.n4.nabble.com/Difference-in-Monte-Carlo-calculation-between-chisq-test-and-fisher-test-tp2322494p2322494.html Sent from the R help mailing list archive at Nabble.com.

Hello, How can I make a monte carlo simulation on R? Regards Adel -- PhD candidate in Computer Science Address 3 avenue lamine, cité ezzahra, Sousse 4000 Tunisia tel: +216 97 246 706 (+33640302046 jusqu'au 15/6) fax: +216 71 391 166 [[alternative HTML version deleted]]

Hi there, I am running Monte Carlo Simulations in R using ordinary "while (condition)" loops. Since the number of iterations is something like 100.000 and within each iteration a given subsample is extended sequentially it takes hours to run the simulation. Does anyone know if there is either a way to avoid usi...

> Dear R experts, >I am sorry for my inability. >I have the following dataset: > Qtot Itot >1 73 684 >2 64 451 >3 71 378 >4 65 284 >5 47 179 >6 31 117 >7 19 69 > >Now I need to perform Monte Carlo Pertutation test underlaying the following condition. > > >Condition > >In order to choose randomly (5000 times) for the Qtot in the interval 0 to the maximum possible value of > >Qtot for each observed value of the independent variable (Itot), Monte Carlo tests needed t...

...ollowing requirements: - it teaches well MCMC methods; - it is easy to implement numerically the ideas of the book, and notation and concepts are similar to the corresponding R packages that deal with MCMC methods. I have done a search and 2 books seem to satisfy my requirements: - Markov Chain Monte Carlo In Practice, by W.R. Gilks and others. - Monte Carlo Statistical methods, Robert and Casella. What do people think about these books? Is there a suggestion of some other book that could satisfy better my requirements? Thank you very much in advance. -----------------------------------...

Hi, R-helpers, I'm trying to use R to do a Monte Carlo simulation and need the help. What I have is a matrix that consists of the probabilities for the persons to choose zones. For example, in the matrix shown below, each column represents a person, and each row represents a zone. So, the probability that the first person will choose the 2nd zon...

Dear Listers; Does anybody has experience in doing simulation via Qusi-Monte carlo in R or S-plus, if so, could you like to send a small copy of your program to me, I appreciate and thanks in advance!! Frankly speaking, I am struggling to write this kind of program, while I could not figure out, painful!!!!! Best regards, Tony ---------------------------------...

Dear R helpers Suppose I have a portfolio of securities with exposure to Equity, Bonds and Forex (say $ 1000000 each). Is there any fucntion in R that will help me calculate Value at Risk (VaR) using Monte carlo Simulation , Historic simulation and Variance - Covariance Simulation. With regards Maithili

Hello Dear, I am trying to generate samples by using Monte Carlo simulation. For example, 1000 samples, Exponential distribution (f(x), lambda=0.0005, 0<=x<=360) Is there any package for Monte Carlo or just use random sample generation function? Many thank you for your help in advance, Jin -- View this message in context: http://n4.nabble.com/...

===== Summary ===== Version 0.1.0 provides the initial release of RcppSMC, an integration of the SMCTC template classes for Sequential Monte Carlo and Particle Filters (Johansen, 2009, J Statistical Software, 30:6) with the Rcpp package for R/C++ Integration (Eddelbuettel and Francois, 2011, J Statistical Software, 40:8). RcppSMC allows for easier and more direct access from R to the computational core of the SMC algorithm. ===== Ove...

===== Summary ===== Version 0.1.0 provides the initial release of RcppSMC, an integration of the SMCTC template classes for Sequential Monte Carlo and Particle Filters (Johansen, 2009, J Statistical Software, 30:6) with the Rcpp package for R/C++ Integration (Eddelbuettel and Francois, 2011, J Statistical Software, 40:8). RcppSMC allows for easier and more direct access from R to the computational core of the SMC algorithm. ===== Ove...

...5,7,6,9,8,2,0) y<-matrix(x,3,3) z<-apply(y,2,function(x)x/sum(x)) z On Tue, Mar 23, 2010 at 6:59 PM, David Winsemius <dwinsemius@comcast.net>wrote: > > On Mar 23, 2010, at 9:05 PM, Hongwei Dong wrote: > > Hi, R-helpers, >> >> I'm trying to use R to do a Monte Carlo simulation and need the help. What >> I >> have is a matrix that consists of the probabilities for the persons to >> choose zones. For example, in the matrix shown below, each column >> represents >> a person, and each row represents a zone. So, the probability...

Hi, This is an announcement for a package that has been up on CRAN since March 2006 but was never announced. The package is Mchtest - for Monte Carlo hypothesis tests allowing sequential stopping. The idea is to use the sequential probability ratio test boundaries to stop resampling for a Monte Carlo hypothesis test such as a bootstrap or permutation test. This means that you will take many samples when the p-value is close to the signif...

Hi, This is an announcement for a package that has been up on CRAN since March 2006 but was never announced. The package is Mchtest - for Monte Carlo hypothesis tests allowing sequential stopping. The idea is to use the sequential probability ratio test boundaries to stop resampling for a Monte Carlo hypothesis test such as a bootstrap or permutation test. This means that you will take many samples when the p-value is close to the signif...

Hi AlL, I ahve this problem that my objective function is discontinous in the paramaters and I need to use methods such as nelder-mead to get around this. My question is: How do i compute standard errors to a problem that does not have a gradient? Any literature on this is greatly appreciated. Jean,

Hello, I am trying to simulate binary outcome data for a logistic regression Monte Carlo study. I need to eventually be able to manipulate the structure of the error term to give groups of observations a random effect. Right now I am just doing a very basic set up to make sure I can recover the parameters properly. I am running into trouble with the code below. It works if you t...

Dear Sir, Please tell me how to perform monte-carlo white noise test using R. Thanking you with regards S.Sijikumar -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe"...

Dear all, I have a question about the chisq.test command. As an option one can chose the computation of p-values by Monte-Carlo simulation (simulate.p.value=T). Is there any documentation available how this calculations are done and how this simulation based test behaves in small samples? Thanks Klaus Abberger University of Konstanz, Germany [[alternate HTML version deleted]]