search for: misc3d

Hi, I am trying to install the misc3d package on a Windows (XP) installation of R 2.0.1 using install.packages("misc3d") but with no success. I have used this approach with other packages OK, but for misc3d I get the following output... trying URL `http://cran.r-project.org/bin/windows/contrib/2.0/PACKAGES' Content type...

Hi, I have a question about exporting interactive 3D plots. I use the following code to plot a contour of a trivariate normal distribution: library(mvtnorm) library(rgl) library(misc3d) n=25 x=seq(-3,3,length=n) X=cbind(rep(x,each=n**2),rep(rep(x,each=n),n),rep(x,n**2)) p=array(dmvnorm(X,sigma=diag(3)*0.5+0.5),c(n,n,n)) contour3d(p,x,x,x,level=mean(p)) lim=c(-3,3) decorate3d(xlim=lim,ylim=lim,zlim=lim,xlab="Variable X",ylab="Variable Y",zlab="Variable Z...

Hi the list, I would like to draw some lines with misc3d. I find a lot of tools to draw surfaces, but nothing for simple line... Is it possible? Note that I know that it is possible to draw lines with rgl (using lines3d), but I need to do it with misc3d to export the drawing in .asy format. Any solution? Christophe

Hi the list, I use rgl to produce a 3D graph. I would like to "show" this graph to some collaborator. Is there a way to save it and send it to someone else? Christophe Genolini

Hi, I'm trying to make sense of the image3d plots in misc3d. Unfortunately I can't find any authors on the help pages of the function to e-mail directly. In the following toy example, I'm puzzled as to why (1) the positions of the image plot on the axes include negative values when I think I've specified all to be 1:3 and (2) the logic that need...

Hi, I am trying to load the library(ks), but I am getting the following error: Loading required package: KernSmooth KernSmooth 2.22 installed Copyright M. P. Wand 1997 Loading required package: mvtnorm Loading required package: rgl Loading required package: misc3d Error in lazyLoadDBfetch(key, datafile, compressed, envhook) : ReadItem: unknown type 241 In addition: Warning messages: 1: package 'ks' was built under R version 2.7.1 2: package 'misc3d' was built under R version 2.6.0 Error: package/namespace load failed for 'ks'...

I'm making some 3D plots with contour3d from misc3d and wireframe from lattice. I want to view them from below; i.e. the negative z-axis. I can't figure out how to do so. I would like my point of view looking up from below, with the z, y, and x axes positive going away. Can anyone tell me the correct settings for screen to achieve this? Her...

The misc3d package provides a small collection of mostly rgl-based functions for 3D data: contour3d Uses rgl to render isosurfaces, or three-dimensional contours, computed by the marching cubes algorithm. image3d Crude 3d analog of image() using rgl to plot points on a th...

The misc3d package provides a small collection of mostly rgl-based functions for 3D data: contour3d Uses rgl to render isosurfaces, or three-dimensional contours, computed by the marching cubes algorithm. image3d Crude 3d analog of image() using rgl to plot points on a th...

So I wanted to export a contour3d object into VTK and it worked well enough, except the top of the ball (the contour) was missing. Example below, or gist here: https://gist.github.com/muschellij2/5126544 rm(list=ls()) require(misc3d) f <- function(x, y, z) x^2+y^2+z^2 x <- seq(-2,2,len=20) ball <- contour3d(f,4,x,x,x, draw=FALSE) drawScene.rgl(ball) ### get the triangles allids <- rgl.ids() id <- allids$id[allids$type == "triangles"] filename="test.vtk" f <- file(filename, open...

regarding my previous mail for this topic, I have in the meantime identified my misconception. actually, `computeContour3d' returns the vertices just fine in the correct coordinate frame. the misconception was caused basically by assuming that the `level' argument was a fractional threshold relative to the maximum of the array. so I believed that the rendered cube actually is

I saw that in rgl:::writeWebGL that "Polygons will only be rendered as filled; there is no support in WebGL for wireframe or point rendering.". I found that you can easily use contour3d to make reproducible contour web figures, such as (taken from contour3d help) library(AnalyzeFMRI) a <- f.read.analyze.volume(system.file("example.img", package=

...dd axes and other elements to the isosurface plot, and use contour3d in conjunction with lattice. Regarding lattice, I'm not necessarily looking for conditioning on the data shown in the isosurface plots, just a way to show multiple plots in one figure and label them. I am new to the packages misc3d and rgl. Thanks, Scott Waichler Pacific Northwest National Laboratory scott.waichler at pnl.gov

Hello everybody, I would like to solve the problem described below in R (if possible). I am very new to R and have therefore no idea what to even look for in the docu. Therefore, if someone could tell me if this is possible in R and where I might find the respective docu then I would already be very thankful. I have a large set (a few million) of points in 3D. I would like to create a

Hey, Is there any function plotting several "implicit functions" (F(x,y)=0) on the same fig. Is there anyone who has an example code of how to do this? The contour3d function in the misc3d package only work with the functions with three dimensions. Thanks a lot. Many thanks for your help. KnifeBoot [[alternative HTML version deleted]]

Hi the list, Using misc3d, we can export 3d dynamic graph in pdf format. Is it also possible to export these graph into a format that we can publish on the web? Christophe -- Christophe Genolini Maître de conférences en bio-statistique Vice président Communication interne et animation du campus Université Paris Ouest...

I think I just saw a thread go by on " how do I make interactive PDF from rgl output" but I ignored it at the time and can't seem to find consensus result on google. Essentially I wanted to create pdf or other output to share a 3D plot and let viewers interact with it but it still wasn't clear on easiest way to do this. Is this 2009 page the best reference?

Hi, When plotting the density estimation with DrawDensity3D-function (in package VecStatGraphs3D) it often happens that the end product ie. layers are not intact , see figure in the link: https://www.dropbox.com/s/vzyaiu0vso8hjw2/20623868_10213333234554853_1371245353_n.png?dl=0 Can we somehow effect on that an get intact layers? -- Atte Tenkanen

Hi all, How do I visualize a contour of a tri-variate normal distribution? I just like to see the ellipsoid very much. I hope there is a easy way or existing method in R. Thank you a lot! Michael. [[alternative HTML version deleted]]

Dear list, I wish to visualise some 4D data as a kind of colour / translucent cloud in 3D. I haven't seen such plots in R (but perhaps I missed a feature of rgl). The easiest option I found would be to export the data in povray's df3 (density file) format and visualise it with povray. The format specification baffles me a little, http://www.povray.org/documentation/view/3.6.1/374/ ;