Displaying 5 results from an estimated 5 matches for "microsatellites".
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microsatellite
2012 Sep 10
1
Calculating Linkage Disequilibrium for Microsatellite Markers?
Dear R helpers,
I am trying to test for linkage disequilibrium (LD) in R between all pairs
of loci. Importantly, my loci are microsatellites and have up to 30
alleles per locus. Do you know of any R packages that can either (1)
calculate measures of LD directly or (2) test for the presence of LD within
a statistical framework? Every package I have run across seems to be only
able to handle biallelic (e.g., SNP) data. I have
searched...
2010 Sep 01
2
Rd-file error: non-ASCII input and no declared encoding
Dear list,
I came across the following error for three of my newly written Rd-files:
non-ASCII input and no declared encoding
I can't make sense of this.
Below I copied in one of the three files.
Can anybody please tell me what's wrong with it?
Thank you,
Christian
\name{tetragonula}
\alias{tetragonula}
\alias{tetragonula.coord}
\docType{data}
% \non_function{}
\title{Microsatellite
2008 Apr 19
1
resampling from distributions
Hello All,
Once again thanks for all of the help to date. I am climbing my R learning
curve. I've got a few more questions that I hope I can get some guidance on
though. I am not sure whether the etiquette is to break up multiple
questions or not but I'll keep them together here for now as it may help put
the questions in context despite the fact that the post may get a little
long.
2012 Nov 13
2
Discrete trait Ornstein–Uhlenbeck in R?
Is there a package that will allow me to fit Brownian motion and
Ornstein?Uhlenbeck models of evolution for discrete traits? I know that
geiger and ouch have commands for fitting these models for continuous
traits, but these aren't suitable for discrete trait evolution, correct?
--
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2010 Jul 18
6
CRAN (and crantastic) updates this week
CRAN (and crantastic) updates this week
New packages
------------
* allan (1.0)
Alan Lee
http://crantastic.org/packages/allan
Automates Large Linear Analysis Model Fitting
* andrews (1.0)
Jaroslav Myslivec
http://crantastic.org/packages/andrews
Andrews curves for visualization of multidimensional data
* anesrake (0.3)
Josh Pasek
http://crantastic.org/packages/anesrake
This