search for: melanogaster

Hello, Please have a look at the code below, which I use to read in the attached file. As line 18 of the file reads "1065:>sp|Q9V3T9|ADRO_DROME NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Drosophila melanogaster GN=dare PE=2 SV=1", I expect the code below to produce a 3 column data frame with most of the last column empty and line 18 to produce a data.frame row like so: V1 1065 V2 >sp|Q9V3T9|ADRO_DROME NADPH V3 adrenodoxin oxidoreductase, mitochondrial OS=Drosophila melanogaster GN=dare PE...

...and the rows to be columns. What's the easiest way to do this in R? > class(d) [1] "data.frame" > rownames(d) [1] "98x101" "40x98" "30x40" "0x30" > colnames(d) [1] "H..sapiens" "C..elegans" "D..melanogaster" "S..cerevisiae" [5] "E..coli" "M..tuberculosis" "B..subtilis" "V..cholerae" [9] "A..pernix" "P..horikoshii" "M..jannaschii" "A..aeolicus" [13] "H..pylori"...

...mad using it. I've managed to produce a barplot with the labels for the ytick marks placed horizontally (perpendicular to the y-axis) usiing par(las=1). The problem is that most of my labels are in part beyond the plotting area because they are rather long (e.g. "H. sapiens", "D. melanogaster" ...). What is the easiest way to solve this problem, can I (somehow) re-scale the x-extension and x-shift the plot to get more space to the left of the visible area? thanks a lot for help, Arne -- Arne Mueller Biomolecular Modelling Laboratory Imperial Cancer Research Fund 44 Lincoln...

I am a relative newbie to survival analysis and R in general, but would like to use the coxme package to analyse some data I currently have. The data is relative to survival times of drosophila melanogaster populations to infection with pathogens, and has the variables: Time, Status, Treatment (4 treatments + 2 controls) Population Replicate ?and I'm currently using the following call mixed<- coxme(formula = Surv(Time, Status) ~ strata(Treatment) + (1 | Population/Replicate),x=T,y=T) The treat...

Dear all, I have a data which is in text file and i would like to import the data to R. From the manual, i?ve found the read.table command function is the most appropriate but when i wrote the command an error had occur. It say ?Error in read.table"C:/Users/user/Documents/cfa-1.txt", header = T, sep = "\t",skip=10) :more columns than column names?. Please help me with this as

...qiRf1mkMT-Z@mail.gmail.com> > Content-Type: text/plain; charset=ISO-8859-1 > > I am a relative newbie to survival analysis and R in general, but > would like to use the coxme package to analyse some data I currently > have. > The data is relative to survival times of drosophila melanogaster > populations to infection with pathogens, and has the variables: > Time, > Status, > Treatment (4 treatments + 2 controls) > Population > Replicate > ?and I'm currently using the following call > mixed<- coxme(formula = Surv(Time, Status) ~ strata(Treatment) + (1 | &...