search for: libr

...ibc.so.6(+0x80aef)[0x7f774ceceaef] /lib64/libc.so.6(+0x8137e)[0x7f774cecf37e] /usr/local/lib/libproj.so.13(pj_dealloc+0xe)[0x7f773f13ddee] /usr/local/lib/libgdal.so.20(_ZN10OGRProj4CTD1Ev+0x77)[0x7f773f75a2f7] /usr/local/lib/libgdal.so.20(_ZN10OGRProj4CTD0Ev+0x9)[0x7f773f75a3f9] /usr/local/lib64/R /library/sf/libs/sf.so(_Z13CPL_transformN4Rcpp6VectorILi19ENS_15PreserveStorageEEENS0_ILi16ES1_EE+0x1e2)[0x7f7738566582] /usr/local/lib64/R /library/sf/libs/sf.so(_sf_CPL_transform+0x72)[0x7f7738556472] /usr/local/lib64/R/lib/libR.so(+0xf58ed)[0x7f774d97f8ed] /usr/local/lib64/R/lib/libR.so(+0x131b36)[0x7...

..... I think my next step will be to re-build R on these systems and see if the problem disappears. Right? If it still crashes, I'll make sure I have debugging symbols and give you a full backtrace. If it does not crash, I'll let you know as well Here's the session that crashes > library(car) > data(Chile) > edit(Chile) *** buffer overflow detected ***: /usr/lib/R/bin/exec/R terminated ======= Backtrace: ========= /lib/libc.so.6(__chk_fail+0x29)[0xa8079d] /lib/libc.so.6[0xa8195d] /usr/lib/R/modules//R_X11.so[0x7c094a] /usr/lib/R/modules//R_X11.so[0x7c20dd] /usr/lib/R/modul...

I have an R script that I run using nohup R CMD BATCH r.in r.out & The code loops through data from the database and takes hours. The problem is, in about an hour and a half after I start the script the program stops and I get /usr/lib/R/bin/BATCH: line 55: 14067 Done ( echo "invisible(options(echo = TRUE))"; cat ${in}; echo "proc.time()" ) 14068

...UE) Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace *************** OS X Crash report: Date/Time: 2007-11-23 11:19:19.135 +0100 OS Version: 10.4.11 (Build 8S165) Report Version: 4 Command: R Path: /Library/Frameworks/R.framework/Resources/bin/exec/R Parent: tcsh [2437] Version: ??? (???) PID: 3167 Thread: 0 Exception: EXC_BAD_ACCESS (0x0001) Codes: KERN_PROTECTION_FAILURE (0x0002) at 0x00000001 Thread 0 Crashed: 0 libBLAS.dylib 0x920fc374 atl_f77wrap_zdotc__ + 80 1 libBLAS.dy...

...aef] > /lib64/libc.so.6(+0x8137e)[0x7f774cecf37e] > /usr/local/lib/libproj.so.13(pj_dealloc+0xe)[0x7f773f13ddee] > /usr/local/lib/libgdal.so.20(_ZN10OGRProj4CTD1Ev+0x77)[0x7f773f75a2f7] > /usr/local/lib/libgdal.so.20(_ZN10OGRProj4CTD0Ev+0x9)[0x7f773f75a3f9] > /usr/local/lib64/R > /library/sf/libs/sf.so(_Z13CPL_transformN4Rcpp6VectorILi19ENS_15PreserveStorageEEENS0_ILi16ES1_EE+0x1e2)[0x7f7738566582] > /usr/local/lib64/R > /library/sf/libs/sf.so(_sf_CPL_transform+0x72)[0x7f7738556472] > /usr/local/lib64/R/lib/libR.so(+0xf58ed)[0x7f774d97f8ed] > /usr/local/lib64/R/lib/li...

...que lo haga desde la red). Utilizo R 2.15.1 en Ubuntu 11.10 y apenas estoy iniciando en R. Necesito ayuda para resover estos problemas, pues necesito sobre todo instalar el paquete psych. Gracias > install.packages("psyc")Installing package(s) into ‘/home/jonathan/R/i686-pc-linux-gnu-library/2.15’(as ‘lib’ is unspecified)Mensajes de aviso perdidospackage ‘psyc’ is not available (for R version 2.15.1) > install.packages("psych")Installing package(s) into ‘/home/jonathan/R/i686-pc-linux-gnu-library/2.15’(as ‘lib’ is unspecified)probando la URL ''http://brieger.esa...

Good Afternoon: Have an R script that uses RMySQL package. Everything works great within 32 bit ubuntu linux environment (/usr/sbin/mysqld: ELF 32-bit LSB shared object, Intel 80386, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.15, stripped). > mysqlClientLibraryVersions() 5.1.41 5.1.37 50141 50137 Now testing on 64 bit ubuntu linux environment (/usr/sbin/mysqld:ELF 64-bit LSB executable, x86-64, version 1 (SYSV), dynamically linked (uses shared libs), for GNU/Linux 2.6.15, stripped). > mysqlClientLibraryVersions() 5.0.75 5.0.75 50075 50075 Foll...

...3c87665768] [ 7] /usr/lib64/libX11.so.6(XSupportsLocale+0x9) [0x3c87665b59] [ 8] /usr/lib64/R/modules//R_X11.so(X11_Open+0x51) [0x2aaab8a32581] [ 9] /usr/lib64/R/modules//R_X11.so(X11DeviceDriver+0x19a) [0x2aaab8a336aa] [10] /usr/lib64/R/modules//R_X11.so [0x2aaab8a33c30] [11] /usr/lib64/R/lib/libR.so [0x3659cff75e] [12] /usr/lib64/R/lib/libR.so(Rf_eval+0x427) [0x3659ccc2d7] [13] /usr/lib64/R/lib/libR.so [0x3659ccd6a2] [14] /usr/lib64/R/lib/libR.so(Rf_eval+0x427) [0x3659ccc2d7] [15] /usr/lib64/R/lib/libR.so(Rf_applyClosure+0x291) [0x3659ccfa41] [16] /usr/lib64/R/lib/libR.so(Rf_eval+0x2fb...

...the memory leaks ==9370== 162 (160 direct, 2 indirect) bytes in 1 blocks are definitely lost in loss record 11 of 42 ==9370== at 0x4A19D35: malloc (vg_replace_malloc.c:149) ==9370== by 0x84490E0: ??? ==9370== by 0x844D346: ??? ==9370== by 0x4BBE1A2: do_dotCode (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4BE9035: Rf_eval (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4BEBA3F: do_set (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4BE8E5E: Rf_eval (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4BEAF0D: do_begin (in /usr/lib64/R/lib/libR.so) ==9370== by 0x4BE8E5E: Rf_eval...

...501 Thread eef8d9 DispatchQueue 1 User stack: 19 start + 52 (in R) [0x100001a74] 19 main + 844 (in R) [0x100001dec] 19 -[REngine runREPL] + 102 (in R) [0x100010f86] 19 run_REngineRmainloop + 192 (in R) [0x1000194a0] 19 R_ReplDLLdo1 + 462 (in libR.dylib) [0x10016ce4e] 19 Rf_eval + 1196 (in libR.dylib) [0x10013ca1c] 19 do_for + 678 (in libR.dylib) [0x100140f66] 19 Rf_eval + 1196 (in libR.dylib) [0x10013ca1c] 19 do_begin + 308 (in libR.dylib) [0x100141724]...

...1 en Ubuntu 11.10 y apenas estoy iniciando en R. Necesito > ayuda para resover estos problemas, pues necesito sobre todo instalar el > paquete psych. > > Gracias > > > >> install.packages("psyc")Installing package(s) into > ?/home/jonathan/R/i686-pc-linux-gnu-library/2.15?(as ?lib? is > unspecified)Mensajes de aviso perdidospackage ?psyc? is not available (for > R version 2.15.1) > install.packages("psych")Installing package(s) into > ?/home/jonathan/R/i686-pc-linux-gnu-library/2.15?(as ?lib? is > unspecified)probando la URL '...

...i Michael, > > I wonder whether you have come across this before? I am testing RGtk2 > on Ubuntu and it seems that any error that occurs in that context > kills the R process with a message "stack smashing detected". This is > on Ubuntu 8.04. Minimal example: > > > library(RGtk2) > > sessionInfo() > R version 2.7.1 (2008-06-23) > i486-pc-linux-gnu > > locale: > > LC_CTYPE=en_AU.UTF-8;LC_NUMERIC=C;LC_TIME=en_AU.UTF-8;LC_COLLATE=en_AU.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_AU.UTF-8;LC_PAPER=en_AU.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEA...

...site http://cran.r-project.org/index.html. I know that I need the ubuntu package r-base-dev to install packages with that command. I run in a terminal the following commands: >sudo R >> install.packages("faraway") Installing package(s) into ‘/home/vanessa/R/i686-pc-linux-gnu-library/2.15’ (as ‘lib’ is unspecified)probando la URL 'http://cran.rstudio.com/src/contrib/faraway_1.0.5.tar.gz'Content type 'application/x-gzip' length 328901 bytes (321 Kb)URL abierta==================================================downloaded 321 Kb *** buffer overflow detected ***:...

Dear All, I am actually on R-devel using shell consol. When I run RStudio, it can't find libR.so in the new /lib folder where is libRblas.so libRlapack.so. At first step I configure R-devel to share library with ./configure --enable-R-shlib. when I copied libR.so from /usr/lib/R/lib/libR.so (stable version R 3.1) to /usr/local/R-devel/lib/libR.so (R-devel version), That doesn't work....

Dear All, I am actually on R-devel using shell consol. When I run RStudio, it can't find libR.so in the new /lib folder where is libRblas.so libRlapack.so. At first step I configure R-devel to share library with ./configure --enable-R-shlib. when I copied libR.so from /usr/lib/R/lib/libR.so (stable version R 3.1) to /usr/local/R-devel/lib/libR.so (R-devel version), That doesn't work....

...ot;), I get a whole bunch of errors, most of which referred to the dylib (see below). Is there an Rstem package available for Intel Macs? Thanks in advance! Tina. ... mytestpointer targets in passing argument 1 of 'Rf_mkChar' differ in signedness ld: warning can't open dynamic library: /Developer/SDKs/ MacOSX10.4u.sdk/Library/Frameworks/R.framework/Versions/2.5/Resources/ lib/libRblas.dylib referenced from: /Library/Frameworks/ R.framework/../R.framework/R (checking for undefined symbols may be affected) (No such file or directory, errno = 2) ld: warning can't open d...

...so) ==30551== by 0x48D1C2C: (within /lib/i686/cmov/libdl-2.5.so) ==30551== by 0x400E255: (within /lib/ld-2.5.so) ==30551== by 0x48D22AB: (within /lib/i686/cmov/libdl-2.5.so) ==30551== by 0x48D1B63: dlopen (in /lib/i686/cmov/libdl-2.5.so) ==30551== by 0x420BCE5: (within /usr/lib/R/lib/libR.so) ==30551== by 0x404403B: (within /usr/lib/R/lib/libR.so) ==30551== by 0x404463C: (within /usr/lib/R/lib/libR.so) ==30551== by 0x410BCCD: (within /usr/lib/R/lib/libR.so) ==30551== by 0x40D5550: Rf_eval (in /usr/lib/R/lib/libR.so) ==30551== ==30551== Conditional jump or move depends o...

Full_Name: Benjamin Leblanc Version: 2.4.1 and 2.5.0 OS: Ubuntu Linux 7.04 AMD64 Submission from: (NULL) (195.83.84.213) Here is an example script that may crash under R with Linux AMD 64 bit platforms library('NORMT3') a <- 1:1000/1000 erf(a) I did several tests: - opensuse 10.2 x86_64 with R 2.4.1 and R 2.5.0, produce systematically a frozen R session - ubuntu 7.04 AMD64, R 2.4.1 and R version 2.5.0 (2007-04-23), produce a memory corruption Here is an example with core dump on ubuntu 7....

...nse]), ...) 8: adjbox.formula(x ~ y) 9: adjbox(x ~ y) *** glibc detected *** /usr/lib64/R/bin/exec/R: free(): corrupted unsorted chunks: 0x0000000002510030 *** ======= Backtrace: ========= /lib64/libc.so.6(+0x71e16)[0x7fbaf93a6e16] /lib64/libc.so.6(cfree+0x6c)[0x7fbaf93abb8c] /usr/lib64/R/lib/libR.so(+0x135481)[0x7fbaf9bf5481] /usr/lib64/R/lib/libR.so(+0xa5e19)[0x7fbaf9b65e19] /usr/lib64/R/lib/libR.so(R_GetTraceback+0xb5)[0x7fbaf9b9cdf5] /usr/lib64/R/lib/libR.so(+0x130f83)[0x7fbaf9bf0f83] /lib64/libpthread.so.0(+0xeff0)[0x7fbaf96a5ff0] /usr/local/lib/R/site-library/robustbase/libs/robustbase...

...ol = list(reader = readPlain, load = TRUE, language = "nl_BE")) *** glibc detected *** /usr/lib64/R/bin/exec/R: double free or corruption (!prev): 0x0000000022e20680 *** ======= Backtrace: ========= /lib64/libc.so.6[0x359946f4f4] /lib64/libc.so.6(cfree+0x8c)[0x3599472b1c] /usr/lib64/R/lib/libR.so[0x305b670a3d] /usr/lib64/R/lib/libR.so[0x305b6f875e] /usr/lib64/R/lib/libR.so(Rf_eval+0x436)[0x305b6c39a6] /usr/lib64/R/lib/libR.so[0x305b6c4ce2] /usr/lib64/R/lib/libR.so(Rf_eval+0x436)[0x305b6c39a6] /usr/lib64/R/lib/libR.so(Rf_applyClosure+0x291)[0x305b6c6c01] /usr/lib64/R/lib/libR.so(Rf_eval+0...