Carlos Solís
2013-Mar-09 02:26 UTC
[R-sig-Debian] Aborted (core dumped) installing packages
Hello!, this is my first post, I am a beginner user of ubuntu linux. I have a problem installing packages from CRAN repositories, I mean using the command install.packages(). I followed the instructions from this site http://cran.r-project.org/index.html. I know that I need the ubuntu package r-base-dev to install packages with that command. I run in a terminal the following commands:>sudo R >> install.packages("faraway")Installing package(s) into ‘/home/vanessa/R/i686-pc-linux-gnu-library/2.15’ (as ‘lib’ is unspecified)probando la URL 'http://cran.rstudio.com/src/contrib/faraway_1.0.5.tar.gz'Content type 'application/x-gzip' length 328901 bytes (321 Kb)URL abierta==================================================downloaded 321 Kb *** buffer overflow detected ***: /usr/lib/R/bin/exec/R terminated======= Backtrace: =========/lib/i386-linux-gnu/libc.so.6(__fortify_fail+0x45)[0xb7302045]/lib/i386-linux-gnu/libc.so.6(+0x102e1a)[0xb7300e1a]/lib/i386-linux-gnu/libc.so.6(+0x10515b)[0xb730315b]/usr/lib/R/lib/libR.so(+0x86b02)[0xb744ab02]/usr/lib/R/lib/libR.so(+0x8906b)[0xb744d06b]/usr/lib/R/lib/libR.so(+0xcb979)[0xb748f979]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0x12bfec)[0xb74effec]/usr/lib/R/lib/libR.so(Rf_usemethod+0x4bb)[0xb74f0c1b]/usr/lib/R/lib/libR.so(+0x12d3b2)[0xb74f13b2]/usr/lib/R/lib/libR.so(+0xcb85f)[0xb748f85f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(+0xd88d4)[0xb749c8d4]/usr/lib/R/lib/libR.so(Rf_eval+0x240)[0xb749c1f0]/usr/lib/R/lib/libR.so(+0x12bda3)[0xb74efda3]/usr/lib/R/lib/libR.so(+0x12d515)[0xb74f1515]/usr/lib/R/lib/libR.so(+0xcb85f)[0xb748f85f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0x12bfec)[0xb74effec]/usr/lib/R/lib/libR.so(Rf_usemethod+0x4bb)[0xb74f0c1b]/usr/lib/R/lib/libR.so(+0x12d3b2)[0xb74f13b2]/usr/lib/R/lib/libR.so(+0xcb85f)[0xb748f85f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0x12bfec)[0xb74effec]/usr/lib/R/lib/libR.so(Rf_usemethod+0x4bb)[0xb74f0c1b]/usr/lib/R/lib/libR.so(+0x12d3b2)[0xb74f13b2]/usr/lib/R/lib/libR.so(+0xcb85f)[0xb748f85f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(Rf_eval+0x41d)[0xb749c3cd]/usr/lib/R/lib/libR.so(Rf_ReplIteration+0x1fa)[0xb74db0ca]/usr/lib/R/lib/libR.so(+0x1173ab)[0xb74db3ab]/usr/lib/R/lib/libR.so(run_Rmainloop+0x6a)[0xb74db45a]/usr/lib/R/lib/libR.so(Rf_mainloop+0x19)[0xb74db489]/usr/lib/R/bin/exec/R(main+0x38)[0x8048608]/lib/i386-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0xb72174d3]/usr/lib/R/bin/exec/R[0x8048631]======Memory map: ========08048000-08049000 r-xp 00000000 08:01 8782298 /usr/lib/R/bin/exec/R 08049000-0804a000 r--p 00000000 08:01 8782298 /usr/lib/R/bin/exec/R 0804a000-0804b000 rw-p 00001000 08:01 8782298 /usr/lib/R/bin/exec/R 09c45000-0a873000 rw-p 00000000 00:00 0 [heap] b593d000-b5afc000 rw-p 00000000 00:00 0 b5afc000-b5b6e000 r-xp 00000000 08:01 8655823 /usr/lib/i386-linux-gnu/libquadmath.so.0.0.0 b5b6e000-b5b6f000 r--p 00071000 08:01 8655823 /usr/lib/i386-linux-gnu/libquadmath.so.0.0.0 b5b6f000-b5b70000 rw-p 00072000 08:01 8655823 /usr/lib/i386-linux-gnu/libquadmath.so.0.0.0 b5b70000-b5b8c000 r-xp 00000000 08:01 3408725 /lib/i386-linux-gnu/libgcc_s.so.1 b5b8c000-b5b8d000 r--p 0001b000 08:01 3408725 /lib/i386-linux-gnu/libgcc_s.so.1 b5b8d000-b5b8e000 rw-p 0001c000 08:01 3408725 /lib/i386-linux-gnu/libgcc_s.so.1 b5b8e000-b5c8c000 r-xp 00000000 08:01 8653389 /usr/lib/i386-linux-gnu/libgfortran.so.3.0.0 b5c8c000-b5c8d000 r--p 000fe000 08:01 8653389 /usr/lib/i386-linux-gnu/libgfortran.so.3.0.0 b5c8d000-b5c8e000 rw-p 000ff000 08:01 8653389 /usr/lib/i386-linux-gnu/libgfortran.so.3.0.0 b5c8e000-b5c8f000 rw-p 00000000 00:00 0 b5c8f000-b642c000 r-xp 00000000 08:01 9310128 /usr/lib/lapack/liblapack.so.3gf.0 b642c000-b642d000 r--p 0079c000 08:01 9310128 /usr/lib/lapack/liblapack.so.3gf.0 b642d000-b6430000 rw-p 0079d000 08:01 9310128 /usr/lib/lapack/liblapack.so.3gf.0 b6430000-b653d000 rw-p 00000000 00:00 0 b654a000-b654e000 r-xp 00000000 08:01 656077 /usr/lib/R/library/tools/libs/tools.so b654e000-b654f000 r--p 00003000 08:01 656077 /usr/lib/R/library/tools/libs/tools.so b654f000-b6550000 rw-p 00004000 08:01 656077 /usr/lib/R/library/tools/libs/tools.so b6550000-b65bd000 r-xp 00000000 08:01 655872 /usr/lib/R/library/stats/libs/stats.so b65bd000-b65be000 r--p 0006c000 08:01 655872 /usr/lib/R/library/stats/libs/stats.so b65be000-b65bf000 rw-p 0006d000 08:01 655872 /usr/lib/R/library/stats/libs/stats.so b65bf000-b66f2000 rw-p 00000000 00:00 0 b66f2000-b671b000 r-xp 00000000 08:01 9571470 /usr/lib/R/library/grDevices/libs/grDevices.so b671b000-b671c000 r--p 00028000 08:01 9571470 /usr/lib/R/library/grDevices/libs/grDevices.so b671c000-b671d000 rw-p 00029000 08:01 9571470 /usr/lib/R/library/grDevices/libs/grDevices.so b671d000-b6aaa000 rw-p 00000000 00:00 0 b6aab000-b6ab2000 r-xp 00000000 08:01 655794 /usr/lib/R/library/methods/libs/methods.so b6ab2000-b6ab3000 r--p 00006000 08:01 655794 /usr/lib/R/library/methods/libs/methods.so b6ab3000-b6ab4000 rw-p 00007000 08:01 655794 /usr/lib/R/library/methods/libs/methods.so b6ab4000-b6b4c000 rw-p 00000000 00:00 0 b6b4c000-b6b57000 r-xp 00000000 08:01 3408755 /lib/i386-linux-gnu/libnss_files-2.15.so b6b57000-b6b58000 r--p 0000a000 08:01 3408755 /lib/i386-linux-gnu/libnss_files-2.15.so b6b58000-b6b59000 rw-p 0000b000 08:01 3408755 /lib/i386-linux-gnu/libnss_files-2.15.so b6b59000-b6b6f000 r-xp 00000000 08:01 3408749 /lib/i386-linux-gnu/libnsl-2.15.so b6b6f000-b6b70000 r--p 00015000 08:01 3408749 /lib/i386-linux-gnu/libnsl-2.15.so b6b70000-b6b71000 rw-p 00016000 08:01 3408749 /lib/i386-linux-gnu/libnsl-2.15.so b6b71000-b6b73000 rw-p 00000000 00:00 0 b6b73000-b6b7a000 r-xp 00000000 08:01 3408751 /lib/i386-linux-gnu/libnss_compat-2.15.so b6b7a000-b6b7b000 r--p 00006000 08:01 3408751 /lib/i386-linux-gnu/libnss_compat-2.15.so b6b7b000-b6b7c000 rw-p 00007000 08:01 3408751 /lib/i386-linux-gnu/libnss_compat-2.15.so b6b7c000-b6b83000 r--s 00000000 08:01 8656253 /usr/lib/i386-linux-gnu/gconv/gconv-modules.cache b6b83000-b6c35000 rw-p 00000000 00:00 0 b6c37000-b6d0c000 rw-p 00000000 00:00 0 b6d0c000-b6e3d000 r--p 005e3000 08:01 8657989 /usr/lib/locale/locale-archive b6e3d000-b703d000 r--p 00000000 08:01 8657989 /usr/lib/locale/locale-archive b703d000-b703f000 rw-p 00000000 00:00 0 b703f000-b705b000 r-xp 00000000 08:01 3408801 /lib/i386-linux-gnu/libtinfo.so.5.9 b705b000-b705d000 r--p 0001b000 08:01 3408801 /lib/i386-linux-gnu/libtinfo.so.5.9 b705d000-b705e000 rw-p 0001d000 08:01 3408801 /lib/i386-linux-gnu/libtinfo.so.5.9 b705e000-b706c000 r-xp 00000000 08:01 8655598 /usr/lib/i386-linux-gnu/libgomp.so.1.0.0 b706c000-b706d000 r--p 0000d000 08:01 8655598 /usr/lib/i386-linux-gnu/libgomp.so.1.0.0 b706d000-b706e000 rw-p 0000e000 08:01 8655598 /usr/lib/i386-linux-gnu/libgomp.so.1.0.0 b706e000-b706f000 rw-p 00000000 00:00 0 b706f000-b7072000 r-xp 00000000 08:01 3408717 /lib/i386-linux-gnu/libdl-2.15.so b7072000-b7073000 r--p 00002000 08:01 3408717 /lib/i386-linux-gnu/libdl-2.15.so b7073000-b7074000 rw-p 00003000 08:01 3408717 /lib/i386-linux-gnu/libdl-2.15.so b7074000-b707b000 r-xp 00000000 08:01 3408790 /lib/i386-linux-gnu/librt-2.15.so b707b000-b707c000 r--p 00006000 08:01 3408790 /lib/i386-linux-gnu/librt-2.15.so b707c000-b707d000 rw-p 00007000 08:01 3408790 /lib/i386-linux-gnu/librt-2.15.so b707d000-b7091000 r-xp 00000000 08:01 3408815 /lib/i386-linux-gnu/libz.so.1.2.3.4 b7091000-b7092000 r--p 00013000 08:01 3408815 /lib/i386-linux-gnu/libz.so.1.2.3.4 b7092000-b7093000 rw-p 00014000 08:01 3408815 /lib/i386-linux-gnu/libz.so.1.2.3.4 b7093000-b70a2000 r-xp 00000000 08:01 3408703 /lib/i386-linux-gnu/libbz2.so.1.0.4 b70a2000-b70a3000 r--p 0000e000 08:01 3408703 /lib/i386-linux-gnu/libbz2.so.1.0.4 b70a3000-b70a4000 rw-p 0000f000 08:01 3408703 /lib/i386-linux-gnu/libbz2.so.1.0.4 b70a4000-b70c9000 r-xp 00000000 08:01 8655725 /usr/lib/i386-linux-gnu/liblzma.so.5.0.0 b70c9000-b70ca000 r--p 00024000 08:01 8655725 /usr/lib/i386-linux-gnu/liblzma.so.5.0.0 b70ca000-b70cb000 rw-p 00025000 08:01 8655725 /usr/lib/i386-linux-gnu/liblzma.so.5.0.0 b70cb000-b70cc000 rw-p 00000000 00:00 0 b70cc000-b7106000 r-xp 00000000 08:01 3408777 /lib/i386-linux-gnu/libpcre.so.3.12.1 b7106000-b7107000 r--p 00039000 08:01 3408777 /lib/i386-linux-gnu/libpcre.so.3.12.1 b7107000-b7108000 rw-p 0003a000 08:01 3408777 /lib/i386-linux-gnu/libpcre.so.3.12.1 b7108000-b713d000 r-xp 00000000 08:01 3408787 /lib/i386-linux-gnu/libreadline.so.6.2 b713d000-b713e000 r--p 00035000 08:01 3408787 /lib/i386-linux-gnu/libreadline.so.6.2 b713e000-b7141000 rw-p 00036000 08:01 3408787 /lib/i386-linux-gnu/libreadline.so.6.2 b7141000-b7142000 rw-p 00000000 00:00 0 b7142000-b716c000 r-xp 00000000 08:01 3408736 /lib/i386-linux-gnu/libm-2.15.so b716c000-b716d000 r--p 00029000 08:01 3408736 /lib/i386-linux-gnu/libm-2.15.so b716d000-b716e000 rw-p 0002a000 08:01 3408736 /lib/i386-linux-gnu/libm-2.15.so b716e000-b71e9000 r-xp 00000000 08:01 9308228 /usr/lib/libblas/libblas.so.3gf.0 b71e9000-b71ea000 r--p 0007a000 08:01 9308228 /usr/lib/libblas/libblas.so.3gf.0 b71ea000-b71eb000 rw-p 0007b000 08:01 9308228 /usr/lib/libblas/libblas.so.3gf.0 b71ee000-b71f1000 rw-p 00000000 00:00 0 b71f1000-b71fb000 r-xp 00000000 08:01 3408759 /lib/i386-linux-gnu/libnss_nis-2.15.so b71fb000-b71fc000 r--p 00009000 08:01 3408759 /lib/i386-linux-gnu/libnss_nis-2.15.so b71fc000-b71fd000 rw-p 0000a000 08:01 3408759 /lib/i386-linux-gnu/libnss_nis-2.15.so b71fd000-b71fe000 r--p 00718000 08:01 8657989 /usr/lib/locale/locale-archive b71fe000-b73a1000 r-xp 00000000 08:01 3408704 /lib/i386-linux-gnu/libc-2.15.so b73a1000-b73a2000 ---p 001a3000 08:01 3408704 /lib/i386-linux-gnu/libc-2.15.so b73a2000-b73a4000 r--p 001a3000 08:01 3408704 /lib/i386-linux-gnu/libc-2.15.so b73a4000-b73a5000 rw-p 001a5000 08:01 3408704 /lib/i386-linux-gnu/libc-2.15.so b73a5000-b73a9000 rw-p 00000000 00:00 0 b73a9000-b73c0000 r-xp 00000000 08:01 3408784 /lib/i386-linux-gnu/libpthread-2.15.so b73c0000-b73c1000 r--p 00016000 08:01 3408784 /lib/i386-linux-gnu/libpthread-2.15.so b73c1000-b73c2000 rw-p 00017000 08:01 3408784 /lib/i386-linux-gnu/libpthread-2.15.so b73c2000-b73c4000 rw-p 00000000 00:00 0 b73c4000-b7668000 r-xp 00000000 08:01 8782224 /usr/lib/R/lib/libR.so b7668000-b766b000 r--p 002a3000 08:01 8782224 /usr/lib/R/lib/libR.so b766b000-b7676000 rw-p 002a6000 08:01 8782224 /usr/lib/R/lib/libR.so b7676000-b7760000 rw-p 00000000 00:00 0 b7760000-b7761000 r-xp 00000000 00:00 0 [vdso] b7761000-b7781000 r-xp 00000000 08:01 3408684 /lib/i386-linux-gnu/ld-2.15.so b7781000-b7782000 r--p 0001f000 08:01 3408684 /lib/i386-linux-gnu/ld-2.15.so b7782000-b7783000 rw-p 00020000 08:01 3408684 /lib/i386-linux-gnu/ld-2.15.so bfe63000-bfe85000 rw-p 00000000 00:00 0 [stack]Aborted (core dumped)Warning in install.packages : installation of package ‘faraway’ had non-zero exit status The downloaded source packages are in ‘/tmp/RtmpjJbENN/downloaded_packages’ As I said i am very new to linux and I don't know what I'm missing. I hope you can help me. Note: I've installed the ubuntu package build-essential. Thanks! [[alternative HTML version deleted]]
Michael Rutter
2013-Mar-09 03:06 UTC
[R-sig-Debian] Aborted (core dumped) installing packages
Carlos, On 03/08/2013 09:26 PM, Carlos Sol?s wrote:> Hello!, this is my first post, I am a beginner user of ubuntu linux. > > I have a problem installing packages from CRAN repositories, I mean using > the command install.packages(). > > I followed the instructions from this site > http://cran.r-project.org/index.html. > > I know that I need the ubuntu package r-base-dev to install packages with > that command. > > I run in a terminal the following commands: > >> sudo R >>> install.packages("faraway") >>>---------Clipped to save space -----------------<<<<< > bfe63000-bfe85000 rw-p 00000000 00:00 0 [stack]Aborted (core > dumped)Warning in install.packages : > installation of package ?faraway? had non-zero exit status > > The downloaded source packages are in > ?/tmp/RtmpjJbENN/downloaded_packages? > > > As I said i am very new to linux and I don't know what I'm missing. > > I hope you can help me. > > Note: I've installed the ubuntu package build-essential. >I am able to install the "faraway" package without issue on my Ubuntu box, so this will be difficult to diagnosis. My first suggestion would be to remove r-base and then reinstall it. Also, try running R as root to install packages: "sudo R". What versions of R and Ubuntu are you running? That may help determine the problem. Michael -- Dr. Michael A. Rutter School of Science Penn State Erie, The Behrend College 4205 College Drive Erie, PA 16563 http://math.bd.psu.edu/faculty/rutter mar36 at psu.edu
Carlos Solís
2013-Mar-09 17:11 UTC
[R-sig-Debian] Aborted (core dumped) installing packages
2013/3/8 Carlos Solís <solfonca@gmail.com>> Hello, I've reinstalled r-base and also r-base-dev but I am having the > same problem, I am running R-2.15.3 "Security Blanket", and Ubuntu 12.04.2 > LTS "Precise Pangolin" and it happens with any package I try to install. It > seems to be a memory problem this are my netbook specs: >1 GB of RAM Intel® Atom™ CPU N455 @ 1.66GHz × 2 Linux Kernel 3.5.0-25-generic> > Thanks for the response!!! > > > > 2013/3/8 Michael Rutter <marutter.psu@gmail.com> > >> Carlos, >> >> I am able to install the "faraway" package without issue on my Ubuntu >> box, so this will be difficult to diagnosis. My first suggestion would be >> to remove r-base and then reinstall it. Also, try running R as root to >> install packages: "sudo R". >> >> What versions of R and Ubuntu are you running? That may help determine >> the problem. >> >> Michael >> >> Sent from my iPad >> >> On Mar 8, 2013, at 9:26 PM, Carlos Solís <solfonca@gmail.com> wrote: >> >> > Hello!, this is my first post, I am a beginner user of ubuntu linux. >> > >> > I have a problem installing packages from CRAN repositories, I mean >> using >> > the command install.packages(). >> > >> > I followed the instructions from this site >> > http://cran.r-project.org/index.html. >> > >> > I know that I need the ubuntu package r-base-dev to install packages >> with >> > that command. >> > >> > I run in a terminal the following commands: >> > >> >> sudo R >> >>> install.packages("faraway") >> > >> > Installing package(s) into >> ‘/home/vanessa/R/i686-pc-linux-gnu-library/2.15’ >> > (as ‘lib’ is unspecified)probando la URL >> > 'http://cran.rstudio.com/src/contrib/faraway_1.0.5.tar.gz'Content type >> > 'application/x-gzip' length 328901 bytes (321 Kb)URL >> > abierta==================================================downloaded >> > 321 Kb >> > *** buffer overflow detected ***: /usr/lib/R/bin/exec/R >> > terminated======= Backtrace: >> > >> =========/lib/i386-linux-gnu/libc.so.6(__fortify_fail+0x45)[0xb7302045]/lib/i386-linux-gnu/libc.so.6(+0x102e1a)[0xb7300e1a]/lib/i386-linux-gnu/libc.so.6(+0x10515b)[0xb730315b]/usr/lib/R/lib/libR.so(+0x86b02)[0xb744ab02]/usr/lib/R/lib/libR.so(+0x8906b)[0xb744d06b]/usr/lib/R/lib/libR.so(+0xcb979)[0xb748f979]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0x12bfec)[0xb74effec]/usr/lib/R/lib/libR.so(Rf_usemethod+0x4bb)[0xb74f0c1b]/usr/lib/R/lib/libR.so(+0x12d3b2)[0xb74f13b2]/usr/lib/R/lib/libR.so(+0xcb85f)[0xb748f85f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(+0xd88d4)[0xb749c8d4]/usr/lib/R/lib/libR.so(Rf_eval+0x240)[0xb749c1f0]/usr/lib/R/lib/libR.so(+0x12bda3)[0xb74efda3]/usr/lib/R/lib/libR.so(+0x12d515)[0xb74f1515]/usr/lib/R/lib/libR.so(+0xcb85f)[0xb748f85f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0x12bfec)[0xb74effec]/usr/lib/R/lib/libR.so(Rf_usemethod+0x4bb)[0xb74f0c1b]/usr/lib/R/lib/libR.so(+0x12d3b2)[0xb74f13b2]/usr/lib/R/lib/libR.so(+0xcb85f)[0xb748f85f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0x12bfec)[0xb74effec]/usr/lib/R/lib/libR.so(Rf_usemethod+0x4bb)[0xb74f0c1b]/usr/lib/R/lib/libR.so(+0x12d3b2)[0xb74f13b2]/usr/lib/R/lib/libR.so(+0xcb85f)[0xb748f85f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(+0xd3f0f)[0xb7497f0f]/usr/lib/R/lib/libR.so(Rf_eval+0x175)[0xb749c125]/usr/lib/R/lib/libR.so(Rf_applyClosure+0x3ad)[0xb749fcad]/usr/lib/R/lib/libR.so(Rf_eval+0x41d)[0xb749c3cd]/usr/lib/R/lib/libR.so(Rf_ReplIteration+0x1fa)[0xb74db0ca]/usr/lib/R/lib/libR.so(+0x1173ab)[0xb74db3ab]/usr/lib/R/lib/libR.so(run_Rmainloop+0x6a)[0xb74db45a]/usr/lib/R/lib/libR.so(Rf_mainloop+0x19)[0xb74db489]/usr/lib/R/bin/exec/R(main+0x38)[0x8048608]/lib/i386-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0xb72174d3]/usr/lib/R/bin/exec/R[0x8048631]======>> > Memory map: ========08048000-08049000 r-xp 00000000 08:01 8782298 >> > /usr/lib/R/bin/exec/R >> > 08049000-0804a000 r--p 00000000 08:01 8782298 /usr/lib/R/bin/exec/R >> > 0804a000-0804b000 rw-p 00001000 08:01 8782298 /usr/lib/R/bin/exec/R >> > 09c45000-0a873000 rw-p 00000000 00:00 0 [heap] >> > b593d000-b5afc000 rw-p 00000000 00:00 0 >> > b5afc000-b5b6e000 r-xp 00000000 08:01 8655823 >> > /usr/lib/i386-linux-gnu/libquadmath.so.0.0.0 >> > b5b6e000-b5b6f000 r--p 00071000 08:01 8655823 >> > /usr/lib/i386-linux-gnu/libquadmath.so.0.0.0 >> > b5b6f000-b5b70000 rw-p 00072000 08:01 8655823 >> > /usr/lib/i386-linux-gnu/libquadmath.so.0.0.0 >> > b5b70000-b5b8c000 r-xp 00000000 08:01 3408725 >> > /lib/i386-linux-gnu/libgcc_s.so.1 >> > b5b8c000-b5b8d000 r--p 0001b000 08:01 3408725 >> > /lib/i386-linux-gnu/libgcc_s.so.1 >> > b5b8d000-b5b8e000 rw-p 0001c000 08:01 3408725 >> > /lib/i386-linux-gnu/libgcc_s.so.1 >> > b5b8e000-b5c8c000 r-xp 00000000 08:01 8653389 >> > /usr/lib/i386-linux-gnu/libgfortran.so.3.0.0 >> > b5c8c000-b5c8d000 r--p 000fe000 08:01 8653389 >> > /usr/lib/i386-linux-gnu/libgfortran.so.3.0.0 >> > b5c8d000-b5c8e000 rw-p 000ff000 08:01 8653389 >> > /usr/lib/i386-linux-gnu/libgfortran.so.3.0.0 >> > b5c8e000-b5c8f000 rw-p 00000000 00:00 0 >> > b5c8f000-b642c000 r-xp 00000000 08:01 9310128 >> > /usr/lib/lapack/liblapack.so.3gf.0 >> > b642c000-b642d000 r--p 0079c000 08:01 9310128 >> > /usr/lib/lapack/liblapack.so.3gf.0 >> > b642d000-b6430000 rw-p 0079d000 08:01 9310128 >> > /usr/lib/lapack/liblapack.so.3gf.0 >> > b6430000-b653d000 rw-p 00000000 00:00 0 >> > b654a000-b654e000 r-xp 00000000 08:01 656077 >> > /usr/lib/R/library/tools/libs/tools.so >> > b654e000-b654f000 r--p 00003000 08:01 656077 >> > /usr/lib/R/library/tools/libs/tools.so >> > b654f000-b6550000 rw-p 00004000 08:01 656077 >> > /usr/lib/R/library/tools/libs/tools.so >> > b6550000-b65bd000 r-xp 00000000 08:01 655872 >> > /usr/lib/R/library/stats/libs/stats.so >> > b65bd000-b65be000 r--p 0006c000 08:01 655872 >> > /usr/lib/R/library/stats/libs/stats.so >> > b65be000-b65bf000 rw-p 0006d000 08:01 655872 >> > /usr/lib/R/library/stats/libs/stats.so >> > b65bf000-b66f2000 rw-p 00000000 00:00 0 >> > b66f2000-b671b000 r-xp 00000000 08:01 9571470 >> > /usr/lib/R/library/grDevices/libs/grDevices.so >> > b671b000-b671c000 r--p 00028000 08:01 9571470 >> > /usr/lib/R/library/grDevices/libs/grDevices.so >> > b671c000-b671d000 rw-p 00029000 08:01 9571470 >> > /usr/lib/R/library/grDevices/libs/grDevices.so >> > b671d000-b6aaa000 rw-p 00000000 00:00 0 >> > b6aab000-b6ab2000 r-xp 00000000 08:01 655794 >> > /usr/lib/R/library/methods/libs/methods.so >> > b6ab2000-b6ab3000 r--p 00006000 08:01 655794 >> > /usr/lib/R/library/methods/libs/methods.so >> > b6ab3000-b6ab4000 rw-p 00007000 08:01 655794 >> > /usr/lib/R/library/methods/libs/methods.so >> > b6ab4000-b6b4c000 rw-p 00000000 00:00 0 >> > b6b4c000-b6b57000 r-xp 00000000 08:01 3408755 >> > /lib/i386-linux-gnu/libnss_files-2.15.so >> > b6b57000-b6b58000 r--p 0000a000 08:01 3408755 >> > /lib/i386-linux-gnu/libnss_files-2.15.so >> > b6b58000-b6b59000 rw-p 0000b000 08:01 3408755 >> > /lib/i386-linux-gnu/libnss_files-2.15.so >> > b6b59000-b6b6f000 r-xp 00000000 08:01 3408749 >> > /lib/i386-linux-gnu/libnsl-2.15.so >> > b6b6f000-b6b70000 r--p 00015000 08:01 3408749 >> > /lib/i386-linux-gnu/libnsl-2.15.so >> > b6b70000-b6b71000 rw-p 00016000 08:01 3408749 >> > /lib/i386-linux-gnu/libnsl-2.15.so >> > b6b71000-b6b73000 rw-p 00000000 00:00 0 >> > b6b73000-b6b7a000 r-xp 00000000 08:01 3408751 >> > /lib/i386-linux-gnu/libnss_compat-2.15.so >> > b6b7a000-b6b7b000 r--p 00006000 08:01 3408751 >> > /lib/i386-linux-gnu/libnss_compat-2.15.so >> > b6b7b000-b6b7c000 rw-p 00007000 08:01 3408751 >> > /lib/i386-linux-gnu/libnss_compat-2.15.so >> > b6b7c000-b6b83000 r--s 00000000 08:01 8656253 >> > /usr/lib/i386-linux-gnu/gconv/gconv-modules.cache >> > b6b83000-b6c35000 rw-p 00000000 00:00 0 >> > b6c37000-b6d0c000 rw-p 00000000 00:00 0 >> > b6d0c000-b6e3d000 r--p 005e3000 08:01 8657989 >> /usr/lib/locale/locale-archive >> > b6e3d000-b703d000 r--p 00000000 08:01 8657989 >> /usr/lib/locale/locale-archive >> > b703d000-b703f000 rw-p 00000000 00:00 0 >> > b703f000-b705b000 r-xp 00000000 08:01 3408801 >> > /lib/i386-linux-gnu/libtinfo.so.5.9 >> > b705b000-b705d000 r--p 0001b000 08:01 3408801 >> > /lib/i386-linux-gnu/libtinfo.so.5.9 >> > b705d000-b705e000 rw-p 0001d000 08:01 3408801 >> > /lib/i386-linux-gnu/libtinfo.so.5.9 >> > b705e000-b706c000 r-xp 00000000 08:01 8655598 >> > /usr/lib/i386-linux-gnu/libgomp.so.1.0.0 >> > b706c000-b706d000 r--p 0000d000 08:01 8655598 >> > /usr/lib/i386-linux-gnu/libgomp.so.1.0.0 >> > b706d000-b706e000 rw-p 0000e000 08:01 8655598 >> > /usr/lib/i386-linux-gnu/libgomp.so.1.0.0 >> > b706e000-b706f000 rw-p 00000000 00:00 0 >> > b706f000-b7072000 r-xp 00000000 08:01 3408717 >> > /lib/i386-linux-gnu/libdl-2.15.so >> > b7072000-b7073000 r--p 00002000 08:01 3408717 >> > /lib/i386-linux-gnu/libdl-2.15.so >> > b7073000-b7074000 rw-p 00003000 08:01 3408717 >> > /lib/i386-linux-gnu/libdl-2.15.so >> > b7074000-b707b000 r-xp 00000000 08:01 3408790 >> > /lib/i386-linux-gnu/librt-2.15.so >> > b707b000-b707c000 r--p 00006000 08:01 3408790 >> > /lib/i386-linux-gnu/librt-2.15.so >> > b707c000-b707d000 rw-p 00007000 08:01 3408790 >> > /lib/i386-linux-gnu/librt-2.15.so >> > b707d000-b7091000 r-xp 00000000 08:01 3408815 >> > /lib/i386-linux-gnu/libz.so.1.2.3.4 >> > b7091000-b7092000 r--p 00013000 08:01 3408815 >> > /lib/i386-linux-gnu/libz.so.1.2.3.4 >> > b7092000-b7093000 rw-p 00014000 08:01 3408815 >> > /lib/i386-linux-gnu/libz.so.1.2.3.4 >> > b7093000-b70a2000 r-xp 00000000 08:01 3408703 >> > /lib/i386-linux-gnu/libbz2.so.1.0.4 >> > b70a2000-b70a3000 r--p 0000e000 08:01 3408703 >> > /lib/i386-linux-gnu/libbz2.so.1.0.4 >> > b70a3000-b70a4000 rw-p 0000f000 08:01 3408703 >> > /lib/i386-linux-gnu/libbz2.so.1.0.4 >> > b70a4000-b70c9000 r-xp 00000000 08:01 8655725 >> > /usr/lib/i386-linux-gnu/liblzma.so.5.0.0 >> > b70c9000-b70ca000 r--p 00024000 08:01 8655725 >> > /usr/lib/i386-linux-gnu/liblzma.so.5.0.0 >> > b70ca000-b70cb000 rw-p 00025000 08:01 8655725 >> > /usr/lib/i386-linux-gnu/liblzma.so.5.0.0 >> > b70cb000-b70cc000 rw-p 00000000 00:00 0 >> > b70cc000-b7106000 r-xp 00000000 08:01 3408777 >> > /lib/i386-linux-gnu/libpcre.so.3.12.1 >> > b7106000-b7107000 r--p 00039000 08:01 3408777 >> > /lib/i386-linux-gnu/libpcre.so.3.12.1 >> > b7107000-b7108000 rw-p 0003a000 08:01 3408777 >> > /lib/i386-linux-gnu/libpcre.so.3.12.1 >> > b7108000-b713d000 r-xp 00000000 08:01 3408787 >> > /lib/i386-linux-gnu/libreadline.so.6.2 >> > b713d000-b713e000 r--p 00035000 08:01 3408787 >> > /lib/i386-linux-gnu/libreadline.so.6.2 >> > b713e000-b7141000 rw-p 00036000 08:01 3408787 >> > /lib/i386-linux-gnu/libreadline.so.6.2 >> > b7141000-b7142000 rw-p 00000000 00:00 0 >> > b7142000-b716c000 r-xp 00000000 08:01 3408736 >> > /lib/i386-linux-gnu/libm-2.15.so >> > b716c000-b716d000 r--p 00029000 08:01 3408736 >> > /lib/i386-linux-gnu/libm-2.15.so >> > b716d000-b716e000 rw-p 0002a000 08:01 3408736 >> > /lib/i386-linux-gnu/libm-2.15.so >> > b716e000-b71e9000 r-xp 00000000 08:01 9308228 >> > /usr/lib/libblas/libblas.so.3gf.0 >> > b71e9000-b71ea000 r--p 0007a000 08:01 9308228 >> > /usr/lib/libblas/libblas.so.3gf.0 >> > b71ea000-b71eb000 rw-p 0007b000 08:01 9308228 >> > /usr/lib/libblas/libblas.so.3gf.0 >> > b71ee000-b71f1000 rw-p 00000000 00:00 0 >> > b71f1000-b71fb000 r-xp 00000000 08:01 3408759 >> > /lib/i386-linux-gnu/libnss_nis-2.15.so >> > b71fb000-b71fc000 r--p 00009000 08:01 3408759 >> > /lib/i386-linux-gnu/libnss_nis-2.15.so >> > b71fc000-b71fd000 rw-p 0000a000 08:01 3408759 >> > /lib/i386-linux-gnu/libnss_nis-2.15.so >> > b71fd000-b71fe000 r--p 00718000 08:01 8657989 >> /usr/lib/locale/locale-archive >> > b71fe000-b73a1000 r-xp 00000000 08:01 3408704 >> > /lib/i386-linux-gnu/libc-2.15.so >> > b73a1000-b73a2000 ---p 001a3000 08:01 3408704 >> > /lib/i386-linux-gnu/libc-2.15.so >> > b73a2000-b73a4000 r--p 001a3000 08:01 3408704 >> > /lib/i386-linux-gnu/libc-2.15.so >> > b73a4000-b73a5000 rw-p 001a5000 08:01 3408704 >> > /lib/i386-linux-gnu/libc-2.15.so >> > b73a5000-b73a9000 rw-p 00000000 00:00 0 >> > b73a9000-b73c0000 r-xp 00000000 08:01 3408784 >> > /lib/i386-linux-gnu/libpthread-2.15.so >> > b73c0000-b73c1000 r--p 00016000 08:01 3408784 >> > /lib/i386-linux-gnu/libpthread-2.15.so >> > b73c1000-b73c2000 rw-p 00017000 08:01 3408784 >> > /lib/i386-linux-gnu/libpthread-2.15.so >> > b73c2000-b73c4000 rw-p 00000000 00:00 0 >> > b73c4000-b7668000 r-xp 00000000 08:01 8782224 /usr/lib/R/lib/libR.so >> > b7668000-b766b000 r--p 002a3000 08:01 8782224 /usr/lib/R/lib/libR.so >> > b766b000-b7676000 rw-p 002a6000 08:01 8782224 /usr/lib/R/lib/libR.so >> > b7676000-b7760000 rw-p 00000000 00:00 0 >> > b7760000-b7761000 r-xp 00000000 00:00 0 [vdso] >> > b7761000-b7781000 r-xp 00000000 08:01 3408684 /lib/i386-linux-gnu/ >> ld-2.15.so >> > b7781000-b7782000 r--p 0001f000 08:01 3408684 /lib/i386-linux-gnu/ >> ld-2.15.so >> > b7782000-b7783000 rw-p 00020000 08:01 3408684 /lib/i386-linux-gnu/ >> ld-2.15.so >> > bfe63000-bfe85000 rw-p 00000000 00:00 0 [stack]Aborted (core >> > dumped)Warning in install.packages : >> > installation of package ‘faraway’ had non-zero exit status >> > >> > The downloaded source packages are in >> > ‘/tmp/RtmpjJbENN/downloaded_packages’ >> > >> > >> > As I said i am very new to linux and I don't know what I'm missing. >> > >> > I hope you can help me. >> > >> > Note: I've installed the ubuntu package build-essential. >> > >> > Thanks! >> > >> > [[alternative HTML version deleted]] >> > >> > _______________________________________________ >> > R-SIG-Debian mailing list >> > R-SIG-Debian@r-project.org >> > https://stat.ethz.ch/mailman/listinfo/r-sig-debian >> > >[[alternative HTML version deleted]]