search for: libnetcdf

...-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c ncdf3.c -o ncdf3.o gcc -m64 -std=gnu99 -shared -L/usr/local/lib64 -o ncdf.so ncdf.o ncdf2.o ncdf3.o -L/usr/local/lib -lnetcdf -L/usr/lib64/R/lib -lR /usr/bin/ld: /usr/local/lib/libnetcdf.a(attr.o): relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /usr/local/lib/libnetcdf.a: could not read symbols: Bad value collect2: ld returned 1 exit status make: *** [ncdf.so] Error 1 ERROR: compilation failed for package ?ncdf? * re...

...king for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes Found netcdf.h in: . checking for nc_open in -lnetcdf... yes Found netcdf library file libnetcdf.a in directory . configure: creating ./config.status config.status: creating R/load.R config.status: creating src/Makevars ** libs gcc -m64 -std=gnu99 -I/usr/include/R -I. -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-siz...

...y... yes checking /usr/local/netcdf-3.6.1/include/netcdf.h presence... yes checking for /usr/local/netcdf-3.6.1/include/netcdf.h... yes Using user-specified netCDF include dir=/usr/local/netcdf-3.6.1/include Found netcdf.h in: /usr/local/netcdf-3.6.1/include checking for /usr/local/netcdf-3.6.1/lib/libnetcdf.a... yes Using user-specified netCDF library dir=/usr/local/netcdf-3.6.1/lib Found netcdf library file libnetcdf.a in directory /usr/local/netcdf-3.6.1/lib configure: creating ./config.status config.status: creating R/load.R config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/usr/local/...

...king for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes Found netcdf.h in: . checking for nc_open in -lnetcdf... yes Found netcdf library file libnetcdf.a in directory . configure: creating ./config.status config.status: creating R/load.R config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/usr/lib64/R/include -I/usr/lib64/R/include -I. -I/usr/local/include -fpic -g -O2 -c ncdf2.c -o ncdf2.o gcc -std=gnu99 -I/usr/lib64/R/include -I/usr/l...

..._nc_ttc_to_nctype': ncdf.c:424: warning: implicit declaration of function 'exit' ncdf.c:424: warning: incompatible implicit declaration of built-in function 'exit' gcc -std=gnu99 -shared -L/usr/local/lib64 -o ncdf.so ncdf2.o ncdf3.o ncdf.o-L. -lnetcdf /usr/bin/ld: /usr/local/lib/libnetcdf.a(attr.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC /usr/local/lib/libnetcdf.a: could not read symbols: Bad value collect2: ld returned 1 exit status make: *** [ncdf.so] Error 1 chmod: cannot access `/home/ljin/share/R-2.6...

...nter target type ncdf3.c: In function ‘R_nc_get_vara_numvarid’: ncdf3.c:267: warning: assignment discards qualifiers from pointer target type gcc -std=gnu99 -shared -o ncdf.so ncdf.o ncdf2.o ncdf3.o -L/apps/netcdf/4.0.1/gcc/lib -lnetcdf -L/usr/lib64/R/lib -lR /usr/bin/ld: /apps/netcdf/4.0.1/gcc/lib/libnetcdf.a(attr.o): relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC /apps/netcdf/4.0.1/gcc/lib/libnetcdf.a: could not read symbols: Bad value collect2: ld returned 1 exit status make: *** [ncdf.so] Errore 1 ERROR: compilation failed for package...

.../netcdf/ftp/netcdf-4.0.1.tar.gz tar -xzvf netcdf-4.0.1.tar.gz R CMD INSTALL --configure-args="-with-netcdf_incdir=/home/user/soft/netcdf-4.0.1/libsrc -with-netcdf_libdir=/home/user/soft/netcdf-4.0.1/libsrc/" ncdf_1.6.tar.gz # Error: user specified netCDF library directory does not have libnetcdf.a ! Thank you very much for your kind help. [[alternative HTML version deleted]]

...eds but I receive the following error during the loading phase of installation: ** building package indices ... ** testing if installed package can be loaded Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object '/usr/local/lib64/R/library/ncdf4/libs/ncdf4.so': libnetcdf.so.6: cannot open shared object file: No such file or directory ERROR: loading failed * removing ?/usr/local/lib64/R/library/ncdf4? Can someone point me in the right direction to resolve this error? Thanks in advance -- View this message in context: http://r.789695.n4.nabble.com/ncdf4-package-in...

Thomas, I'm using your package netCDF. Thanks for making it and for leave it available for public use. It took me a little while installing it, as my netcdf library is libnetcdf.a (not libnetcdf) and my library directory is not /usr/local/lib. Finally, I was able to install with the following: 1. ln -s libnet.a libnet (in my usr/local/netcdf-3.5.0/lib directory) 2. R CMD INSTALL --configure-args=--with-netCDF=/usr/local/netcdf-3.5.0 netCDF_1.5.tar.gz Perhaps you might inc...

...Enhanced Linux (in some modes) generates messages like that when code in a shared library is not compiled to have position independent code. I.e., the -fpic or -fPIC flag was not supplied when compiling. Your build log showed that -fpic was used when compiling your code, but the 3rd party library, libnetcdf.a may not have been compiled this way. The command eu-findtextrel /usr/lib/R/library/ncdf/libs/ncdf.so will tell you which parts of ncdf.so were not compiled with -fpic. If you cannot recompile libnetcdf.a then you may have to turn off some the security enhancements. See http://people.redh...

...tcdf.h usability... yes checking /home/challar/netcdf/include/netcdf.h presence... yes checking for /home/challar/netcdf/include/netcdf.h... yes Using user-specified netCDF include dir=/home/challar/netcdf/include Found netcdf.h in: /home/challar/netcdf/include checking for /home/challar/netcdf/lib/libnetcdf.a... yes Using user-specified netCDF library dir=/home/challar/netcdf/lib Found netcdf library file libnetcdf.a in directory /home/challar/netcdf/lib configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/home/challar/R/R-2.11.1/include -I/home/challar/ne...

Having trouble with netCDF since I upgraded to 1.2.1 (did directly from 1.1.1). Package was recompiled after the upgrade. Symptoms: open.netCDF returns cleanly, but read.netCDF causes R to segfault and dump core. What else do you need me to write to help? --please do not edit the information below-- Version: platform = i586-pc-linux-gnu arch = i586 os = linux-gnu system = i586, linux-gnu

Does anyone know of a module for R to access NetCDF datasets? I remember reading about a module for Splus, but I can't seem to find anything on CRAN. -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the

...h-netCDF=/usr/local/netcdf-3.5.0 To configure the path, but keep getting the following error. climate at netCDF : > R CMD INSTALL /home/climate/murphyb/netCDF * Installing *source* package 'netCDF' ... loading cache ./config.cache checking for ncopen in -lnetcdf... no configure: error: libnetcdf not found ERROR: configuration failed for package 'netCDF' I know it is a path problem but can not find the file to modify to get the correct path. Know doubt this happened before but could somebody tell me what to modify to correct this problems. Thanks -------------------------------...

...itten so they look in more places? Briefly, the problem is that Fedora-Extras installs the header files in a subdirectory /usr/include/netcdf-3 rather than /usr/include: # rpm -ql netcdf-devel /usr/include/netcdf-3 /usr/include/netcdf-3/ncvalues.h /usr/include/netcdf-3/netcdf.h /usr/lib/netcdf-3/libnetcdf.a /usr/lib/netcdf-3/libnetcdf_c++.a /usr/lib/netcdf-3/libnetcdf_g77.a Last week I posted in this list that I re-built the Fedora-Extras netcdf rpm so that it would have more standard installation, and then I was able to make RNetCDF work. In the meanwhile, I posted in bugzilla.redhat.com asking...

...ritten so they look in more places? Briefly, the problem is that Fedora-Extras installs the header files in a subdirectory /usr/include/netcdf-3 rather than /usr/include: # rpm -ql netcdf-devel /usr/include/netcdf-3 /usr/include/netcdf-3/ncvalues.h /usr/include/netcdf-3/netcdf.h /usr/lib/netcdf-3/libnetcdf.a /usr/lib/netcdf-3/libnetcdf_c++.a /usr/lib/netcdf-3/libnetcdf_g77.a Last week I posted in this list that I re-built the Fedora-Extras netcdf rpm so that it would have more standard installation, and then I was able to make RNetCDF work. In the meanwhile, I posted in bugzilla.redhat.com asking i...

Hello, I am a new user of R and Linux (debian squeeze), and I am trying to install the ncdf library. First I don't know wich is the best to use (ncdf or ncdf4), But not matter the one I tried to install, it always failled. I try to find a solution to this common problem on the web, but I never find the good way to solve it. I hope you could help me I try many things during two days and now I

...he same warnings that I get when I compile a corresponding code that runs on its own (i.e. doesn't use the R-libraries) cc -shared -lc -o nc2r.so nc2r.c -I/home/matlab6/extern/include -I/usr/include -I/usr/lib/R/include -I/home/kareb/local/include -L/usr/lib/gcc-lib/i386-linux/2.95.2 /usr/lib/libnetcdf.a -lg2c -lm nc2r.c: In function `ncread': nc2r.c:259: warning: assignment makes integer from pointer without a cast nc2r.c:260: warning: assignment makes integer from pointer without a cast nc2r.c:261: warning: assignment makes integer from pointer without a cast nc2r.c:262: warning: assignmen...

Hello, I'm trying to install ncdf4 on RHEL 5.8, R version 2.15.1. Previously installed is netcdf 3.6.2 from Red Hat, so I've compiled and installed netcdf 4.2.1.1 (with hdf5 and zlib as per install instructions, and also set --enable-netcdf4 option) into /usr/local. When attempting to install ncdf4 it is failing with: ** testing if installed package can be loaded Error in

...===================================== 9: In install.packages(pkgs, repos = views[[i]]$repository, ... : installation of package 'ncdf' had non-zero exit status message error: Fatal error: I cannot find the directory that holds the netcdf include file netcdf.h! solved: apt-get install libnetcdf-dev ================================================================================================ 10: In install.packages(pkgs, repos = views[[i]]$repository, ... : installation of package 'spatialsegregation' had non-zero exit status message error: make: *** [tcltkimg.o] Error 1 ER...