search for: lgslcblas

...lation I'm attempting would have been astronomically time consuming with the JAGS Sampler. A couple webpages suggested the C/GSL might be optimal. My issue is that even though the R CMD SHLIB *c built the *dll for simple examples, when I installed GSL for the (64 bit system), the R CMD -lgsl -lgslcblas *c returns a fatal error: gsl/gsl_rng.h no such file or directory exists. My paths are: Does the order matter? I think Rtools needed to go first (in their order) in the path list. PATH = c:\R\Rtools\bin;c:\R\Rtools\gcc-4.6.3\bin;C:/R/R-2.15.0/bin/x64;C:\Program Files (x86)\MiKTeX 2.8\miktex\bin;C...

...s in my previous attempts with the JAGS sampler. A couple webpages suggested the C/GSL might be optimal. My issue is that even though the R CMD SHLIB *c. built the *.dll for the simple example, when I installed GSL for the (64-bit system), the apparently appropriate terminal command, R CMD -lgsl -lgslcblas *c, returns a fatal error: gsl/gsl_rng.h no such file or directory exists. I understand the issue may be with the way my windows paths are set up. My paths are: PATH = c:\R\Rtools\bin;c:\R\Rtools\gcc-4.6.3\bin;C:/R/R-2.15.0/bin/x64;C:\Program Files (x86)\MiKTeX 2.8\miktex\bin;C:\Program Files\Com...

Dear R-list, I want to use shared library of gsl in R(2.15.1) on unix .I have a makefile such as CC = gcc CFLAGS = -fPIC -O2 PKG_LIBS -lgsl -lgslcblas -lm -lpthread ? OBJS_SPB = calc_spb.o k.o dk.o ddk.o ? ? calc_spb.so : $(OBJS_SPB) ? ????? $(CC) -shared -o calc_spb.so $(LIBS) $(OBJS_SPB) ? clean : ????? rm -f ../*.o *.o ? clean.so: ????? rm -f *.so ? I use R CMD SHLIB calc_spb.c in terminal window of unix and in my directory was built? calc_spb...

...make extensive use of the gsl library in my C code, I have the gsl library installed (within the MinGw directory so it is included in the path) on my local machine. Within the package, I am then including a Makevars file with the following code in order to link to the gsl library: PKG_LIBS=-lgsl -lgslcblas I also know that there is an R package (gsl) making use of some gsl functions which contains a Makevars.win file with the following code: PKG_LIBS=-LF:/MinGW/usr/local/lib -lgsl -lgslcblas # CPPFLAGS=-I$(R_HOME)/include -IF:/MinGW/usr/local/include PKG_CPPFLAGS=-IF:/MinGW/usr/local/include For m...

Following the recommendation of Prof. Ripley, I have created the Makevars file with the line: PKG_LIBS="-L/usr/lib/libm -lm -L/usr/local/lib/libgsl -lgsl -L/usr/local/lib /libgslcblas -lgslcblas" in the working directory. Now I have the code file Example3.c which computes the Bessel function value (the example is taken from the GSL reference book). I am running: R CMD SHLIB Example3.c and all looks good. The dyn.load("Example3.so") fails with the following error message: Er...

...online but just cannot find the answer. I am trying to add c-code, which depend on GSL C library, into my R package. I am using Max OS-X 10.4.3, powerpc-apple-darwin8-gcc-4.0.1 I begin wtih package.skeleton, and then add my c file into folder src and then add file Makevars: PKG_LIBS=-lgsl -lgslcblas -lm In the zzz.R file, I add the function .First.lib: .First.lib <- function(lib, pkg) { library.dynam("anovaGSL", pkg, lib) } I think these two things are enough. then I just run R CMD check anovaGSL (my package name) followed is the error message: Error: .First.lib failed fo...

...ify its arguments ( the arguments are pointers ) I put my function with the C header directives in extern{}. gsl is a library written in C, so I put the gsl's header directives also inside extern{}. I placed in my compiling directory a Makevars file with this content: PKG_LIBS = -lm -lgsl -lgslcblas and my R code looks like: dyn.load('/usr/local/lib/libgslcblas.so',F,) dyn.load('/usr/local/lib/libgsl.so',F,) dyn.load('/home/f/p/integral.so') Any hint? -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://ww...

On 13/09/2017 9:10 AM, David Brayford wrote: > Hi Duncan, > > The output of gsl-config --version > 2.3 > > The output of gsl-config --cflags > -I/lrz/sys/libraries/gsl/2.3/include > > The output of gsl-config --libs > -L/lrz/sys/libraries/gsl/2.3/lib -lgsl -lgslcblas -lm > > gsl_version.h cat output > #define GSL_VERSION "2.3" > #define GSL_MAJOR_VERSION 2 > #define GSL_MINOR_VERSION 3 > > It's puzzling. Sure is. I can't see what would be going wrong. Duncan Murdoch > > David > > On 09/13/2017 02:57 PM,...

On 13/09/2017 5:23 AM, Brayford, David wrote: > When I try to install gsl in R I get the error Need GSL version >= 1.12 . However, I have version 2.3 of gsl installed on the system, which is picked up earlier in the configure process (see below). Is it possible for someone to fix this error in the configure script? > > checking for gsl-config...

...de -I/usr/lib64/R/include -I/usr/include -I/usr/local/include -fpic -O2 -g -c sexp1.c -o sexp1.o sexp1.c: In function `invMatList': sexp1.c:37: warning: passing arg 3 of `SET_VECTOR_ELT' from incompatible pointer type gcc -shared -L/usr/local/lib64 -o sexp1.so sexp1.o -L/usr/lib64 -lgsl -lgslcblas -L/usr/lib -L/usr/lib64/R/lib -lR So, not only would it be helpful to understand how to solve this specific problem, but I would greatly appreciate some general guidance on how to best more data from lists or C datatypes and back again (especially arrays). Also, are the functions and macros desc...

...ion(signature(s="numeric", n="numeric"), gslrng, includes="#include <gsl/gsl_rng.h>", Rcpp=TRUE, cppargs="-I/usr/include", libargs="-lgsl -lgslcblas") print(funx(0, 5)) Brief notes on this: 1) The character variable gslrng contains valid C++ code. 2) The call to cfunction converts this C++ code into a function that calls it -- and this function is compiled, linked and loaded automagically simply using hints about...

...ion(signature(s="numeric", n="numeric"), gslrng, includes="#include <gsl/gsl_rng.h>", Rcpp=TRUE, cppargs="-I/usr/include", libargs="-lgsl -lgslcblas") print(funx(0, 5)) Brief notes on this: 1) The character variable gslrng contains valid C++ code. 2) The call to cfunction converts this C++ code into a function that calls it -- and this function is compiled, linked and loaded automagically simply using hints about...

I have been working on an R package that calls C code using .C(). I recently started including some functions from the GNU Scientific Library in my code. The code runs fine on my machine when not wrapped in the package. But I get the following error from "R CMD check" * checking whether the package can be loaded ... ERROR Loading required package: splancs Loading required package: sp

Dear R users: I have a problem when installing the R package *gsl*. The procedure is as follows: (1) Since it needs a GSL vesion >=1.12, and the GSL library on the serve I use is too old, I download GSL 1.15 and install it in my own account, such as $HOME/local/gsl. Because I do not have root access, so it cannot be installed in standard folder. (2) Then I download the source code of R

Hi all, I've been working on improving R's optim() command, which does general purpose unconstrained optimization. Obviously, this is important for many statistics computations, such as maximum likelihood, method of moments, etc. I have focused my efforts of the BFGS method, mainly because it best matches my current projects. Here's a quick summary of what I've done: *