search for: lcblas

If I configure in R-patched and R-devel, with the same options to configure, then R-patched says checking for ATL_xerbla in -latlas... yes checking for cblas_dgemm in -lcblas... yes checking for dgemm_ in -lf77blas... yes which R-devel says checking for ATL_xerbla in -latlas... yes checking for cblas_dgemm in -lcblas... yes checking for dgemm in -lf77blas... no This is on the same computer and using the same libraries. Observe in R-patched we check for dgemm_ and in...

...I have been trying to figure out on linking R with an external lapack. Even though the R-admin recommends against doing so, our requirements force us to link it to an external lapack. I am running configure with the following parameter. *./configure --with-lapack="-L/usr/lib -llapack -lcblas" * The above seems to be having NO effect. However, later I tried replacing libRlapack, libblas and lapack.so from $(R_HOME)/lib and $(R_HOME)/modules/ with external lapack. Firstly, is this good? Secondly, after doing the above. When I do. When I do >example(svd) The following is the...

Greetings, I have a computer with the following setup: 1)cblfs (pure 64-bit (amd64) linux), kernel2.6.34 gcc4.4.2 2)R-2.11.1 I compiled R with BLAS and lapack using the switched ( --with-blas="- lpthread -latlas -lfptf77blas" --with-lapack="-llapack -lcblas" ). (( http://cran.r-project.org/doc/manuals/R-admin.html#Linear-algebra) ) Prior to compiling R-2.11.1 sh conigure --help gave options including the following SHLIB_LD command for linking shared libraries which contain object files from a C or Fortran compiler...

...sing: gcc -g -Wall -I/usr/local/taucs/src -I/usr/local/taucs/build/linux -c hattrace.c -o hattrace.o gcc -g -L/usr/local/taucs/external/lib/linux -L/usr/local/taucs/lib/linux -L/usr/local/lib -L/opt/gnome/lib -L/usr/lib/R/lib -shared -fpic -o hattrace.so hattrace.o -ltaucs -llapack -lf77blas -lcblas -latlas -lmetis -lm -lg2c -lR I tried the following test commands: library(splines) library(SparseM) B <- splineDesign(knots = 1:10, x = 4:7) D <- diff(diag(dim(B)[2]), differences = 1) BB <- t(B) %*% B S <- as.matrix.ssc(BB + t(D) %*% D) if (!is.loaded(symbol.C("hattrace"))...

...r to this is obvious. I am trying to compile R with ATLAS (successfully compiled 3.9.24 on Ubuntu 10.04 64 bit). I configured with: ./configure --enable-R-shlib --enable-BLAS-shlib --with-blas="-L/usr/local/atlas/lib -lf77blas -latlas" --with-lapack="-L/usr/local/atlaslib -llapack -lcblas" --with-x and I get this error (from config.log): configure:28566: checking for dgemm_ in -L/usr/local/atlas/lib -lf77blas -latlas configure:28587: gcc -std=gnu99 -o conftest -g -O2 -fpic -I/usr/local/include -L/usr/local/lib64 conftest.c -L/usr/local/atlas/lib -lf77blas -latlas -lgfortran...

...r to this is obvious. I am trying to compile R with ATLAS (successfully compiled 3.9.24 on Ubuntu 10.04 64 bit). I configured with: ./configure --enable-R-shlib --enable-BLAS-shlib --with-blas="-L/usr/local/atlas/lib -lf77blas -latlas" --with-lapack="-L/usr/local/atlaslib -llapack -lcblas" --with-x and I get this error (from config.log): configure:28566: checking for dgemm_ in -L/usr/local/atlas/lib -lf77blas -latlas configure:28587: gcc -std=gnu99 -o conftest -g -O2 -fpic -I/usr/local/include -L/usr/local/lib64 conftest.c -L/usr/local/atlas/lib -lf77blas -latlas -lgfortran...

...plot3d.o plotmath.o print.o pr intarray.o printvector.o printutils.o random.o regex.o relop.o saveload.o scan .o seq.o size.o sort.o source.o split.o subassign.o subscript.o subset.o summar y.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libap pl.a ../nmath/libnmath.a -lcblas -latlas -lg2c -lm -L/usr/ccs/lib -L/usr/lib -L /usr/local/lib/gcc-lib/sparc-sun-solaris2.6/2.8.1 -L/usr/local/sparc-sun-solaris 2.6/lib -L/usr/ccs/bin -L/usr/ccs/lib -L/usr/local/lib -lm -L/usr/local/lib -l z -lnsl -lsocket -lreadline -ldl -ltermcap -lm Undefined first refer...

...l the integrate2.2-2 package under R1.1.1 (debian2.2) atlas is linked into the library: Installing package `integrate' ... libs gcc -shared -lc -shared -o /usr/lib/R/library/integrate/libs/integrate.so adapt.o adapt_callback.o bsrl.o flfm.o nxprt.o symrl.o wht.o -L/usr/local/lib -lf77blas -lcblas -latlas -lg2c -lm -L/usr/lib/gcc-lib/i386-linux/2.95.2 -lm R ...however, for R1.2.0 (snapshot ~3 days ago) it looks different: Installing package `integrate' ... libs gcc -shared -o integrate.so adapt.o adapt_callback.o bsrl.o flfm.o nxprt.o symrl.o wht.o -L/usr/local/lib -lg2c -lm -L/us...

I thought I would try compiling R this time with the ATLAS libraries. I have compiled ATLAS and I have the following libraries: libatlas.a libf77blas.a libptcblas.a libtstatlas.a libcblas.a liblapack.a libptf77blas.a Is it sufficient to use ' --with-blas=libatlas.a ' when configuring or do I need to specify any of the other libraries as well? -- William D. McCoy

...RY tryf > tryf.def echo EXPORTS >> tryf.def nm tryf.a > Defs sed -n '/^........ [BCDRT] _/s/^........ [BCDRT] _/ /p' Defs >> tryf.def rm -f Defs gcc --shared -s -o tryf.dll tryf.def tryf.a -Lc:/progra~1/R/rw1031/src/ gnuwin32 -lg2c -Lc:/Rtools/ATLAS/lib/WinNT_PIIISSE1 -lcblas -lf77blas -latlas -lR Thanks very much for the (temporary) solution. The question is, could this be a permanent fix? Regards, Andy > -----Original Message----- > From: Uwe Ligges [mailto:ligges@statistik.uni-dortmund.de] > Sent: Wednesday, December 12, 2001 7:29 AM > To: Prof Brian...

...ource* package `KernSmooth' ... [snip] cc -I/sw/lib/R/include -I/sw/include -fno-common -g -O2 -c sstdiag.c -o sstdiag.o cc -bundle -bundle_loader /sw/lib/R/bin/R.bin -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lf77blas -lcblas -latlas -L/usr/local/lib -lf2c -lm /usr/bin/ld: can't locate file for: -lf77blas make: *** [KernSmooth.so] Error 1 ERROR: compilation failed for package `KernSmooth' Installing *source* package `cluster' ... [snip] cc -bundle -bundle_loader /sw/lib/R/bin/R.bin -o cluster.so clara.o d...

...ther with the static .a versions and some other files. Following the R installation manual, I used the following configure string: ./configure --enable-R-shlib --enable-BLAS-shlib --with-blas="-L/usr/local/atlas/lib -latlas -lf77blas" --with-lapack="-L/usr/local/atlas/lib -llapack -lcblas" CFLAGS='-O3 -pipe -march=native' CXXFLAGS='-O3 -pipe -march=native' R_PAPERSIZE='letter' The configuration routine returns the following errors: checking for cblas_cdotu_sub in vecLib framework... no checking for dgemm_ in -L/usr/local/atlas/lib -latlas -lf77blas......

...yf.a > Defs > > sed -n '/^........ [BCDRT] _/s/^........ [BCDRT] _/ /p' > Defs >> tryf.def > > rm -f Defs > > gcc --shared -s -o tryf.dll tryf.def tryf.a > -Lc:/progra~1/R/rw1031/src/ > > gnuwin32 -lg2c -Lc:/Rtools/ATLAS/lib/WinNT_PIIISSE1 > -lcblas -lf77blas > > -latlas -lR > > > > Thanks very much for the (temporary) solution. The > question is, could this > > be a permanent fix? > > No. It only works for one input file. The quotes were not > there for fun! > (Also names with spaces in.) > &gt...

...m dmvtnorm.c gcc -IC:/cygwin/home/owner/R-2.4.1/include -I/home/owner/BOOM2/src -gdwarf-2 -Wall -O0 -std=gnu99 -c dmvt norm.c -o dmvtnorm.o g++ -shared -o dmvtnorm.dll dmvtnorm.def dmvtnorm.o -LC:/cygwin/home/owner/R-2.4.1/bin -L/home/owner/BOO M2 -lR -lBOOMdebug -llapack -lf77blas -lcblas -latlas -lg2c -lboost_program_options-gcc -lboost_filesyste m-gcc -lboost_signals-gcc -lm c:\programs\Rtools\MinGW\bin\..\lib\gcc\mingw32\3.4.5\..\..\..\..\mingw32\bin\ld.exe: cannot find -lBOOMdebug collect2: ld returned 1 exit status make: *** [dmvtnorm.dll] Error 1

...chtml cp C:/Rtools/R-1.3.1/src/library/base/chm/base.chm C:/Rtools/R-1.3.1/library/base/chtml ************************************************************************** gcc --shared -s -o modreg.dll modreg.def modreg.a modreg_res.o -LC:/Rtools/R-1.3.1/src/gnuwin32 -L/Rtools/ATLAS/lib/WinNT_PII -lcblas -lf77blas -latlas -lR modreg.a(loessf.o)(.text+0x172e):loessf.f: undefined reference to `pow_dd' modreg.a(loessf.o)(.text+0x1749):loessf.f: undefined reference to `pow_dd' modreg.a(loessf.o)(.text+0x1810):loessf.f: undefined reference to `pow_dd' modreg.a(loessf.o)(.text+0x1825):loessf...