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And sorry for the spam, but I meant to say that the Dockerfile is basically following the steps from https://cloud.r-project.org/bin/linux/ubuntu/ as Lauren was trying to do but start by installing the pre-requisites needed to deploy the r-base package on a Ubuntu 22.04 Docker image (which is NOT a base 22.04 but a minimally striped version of 22.04). From: marcoblanchette at icloud.com

Yes, keep the $(lsb-release -cs) there. This allows you to change the version of the OS without having to change anything else (for instance we are migrating all of our docker to 24.04 LTS right now, so we only have to modify the FROM entry and all of our Dockerfile will still work). From: Gerber, Lauren J <lauren.gerber at helsinki.fi> Date: Thursday, July 11, 2024 at 2:21?AM To:

Hi Marco, Thank you for the follow up email. In the line below, do I replace $(lsb-release -cs) with jammy (Ubuntu 22.04) or leave it alone: Add-apt-repository ?deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/? It?s good to know about installations for Bioconductor. I am not currently using it, but I may need it in the future for other projects. Br, Lauren -- Lauren J. Gerber

Hmm? It?s picking up the pre-made binary from ppa:marutter/rrutter4.0 using apt-get install. Isn?t it what Lauren?s trying to do? From: Dirk Eddelbuettel <edd at debian.org> Date: Monday, July 8, 2024 at 11:57?AM To: marcoblanchette at icloud.com <marcoblanchette at icloud.com> Cc: Gerber, Lauren J <lauren.gerber at helsinki.fi>, r-sig-debian at r-project.org <r-sig-debian

Oh, again, sorry for the spam but the problem Lauren is seeing is when she is trying to sign the key. Installing gnugpg usually takes care of that problem. From: marcoblanchette at icloud.com <marcoblanchette at icloud.com> Date: Monday, July 8, 2024 at 12:26?PM To: Dirk Eddelbuettel <edd at debian.org> Cc: Gerber, Lauren J <lauren.gerber at helsinki.fi>, r-sig-debian at

Lauren, little oversight from my Dockerfile, if you want to follow the CRAN steps and get the R from the cloud.r-project.org server, you want to replace && add-apt-repository -y "ppa:marutter/rrutter4.0" With && add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/" The ppa repo is Michael Rutter personal repo

Lauren, On 15 October 2024 at 13:51, Gerber, Lauren J wrote: | I just tried fixing my script and added library(BiocManager) before library | (ggbreak), then rebuilt the image, and am still getting the same error. You need _two_ distinct commands. First install.packages("BiocManager") and second once that is done use it to install 'ggbreak' from BioConductor

Hi Süsser, Ich heisse Lauren. Ich bin gerade 19 Jahre alt und bin Cherleader von der Southern High School in Kalifornien... Mein deutscher Freund hat vor kurzem einige heisse Photos von mir gemacht. Diese haben mir so gefallen, dass ich ihm zum Dank dann einen gebla.... habe. Das hat er auch gleich auf Photots festgehalten. Ich finde die Bilder so heiss und sexy, dass ich sie alle auf meine

Hi Dirk, Thank you so much for looking into this when you got home. I greatly appreciate it. I was actually in the midst of writing to everyone the following message: ?. ?. ?. Hi All, I have some good news. ? My docker image is now up-to-date with R version 4.4.1. I first had to clear a bunch of unused data using docker system prune ?force. Apparently, it cleared over 32.53 gigs of data, and

Hi Dirk and Marco, I need to test some of the suggested solutions and circle back here. Thank you so much for your help. Br, Lauren -- Lauren J. Gerber Bioinformatician Precision Systems Medicine (Kallioniemi) Research Group iCAN ? Digital Precision Cancer Medicine Flagship Institute for Molecular Medicine Finland (FIMM) Nordic EMBL Partnership for Molecular Medicine Biomedicum Helsinki 2U,

On 8 July 2024 at 16:37, marcoblanchette at icloud.com wrote: | Lauren, here?s my Dockerfile I use to build r-base from the repos, it builds on both Arm64 (Mac with Apple M2 chip) and Amd64 (AWS m5.4xlarge instance running Ubuntu 24.04). I rebuilt the docker image this morning and it builds fine with R 4.4.1 That's very kind but recall that Lauren wants _a pre-made binary_ of R. Dirk --

Hello, I just created the account HuibLaurens on Centos Wiki. I would like to help contribute with translation to Dutch, I can also help with monitoring the recent changes. -- Regards, Huib "Abigor" Laurens Support Free Knowledge: http://wikimediafoundation.org/wiki/Donate -------------- next part -------------- An HTML attach...

...that server, they lead to: /home/bella /home/carmen Currently the FPT accounts starts in the home directory when they are logged in. But they are able to see all directories on the server. What can I do to make sure they cant come out of there home directory? -- Regards, Huib "Abigor" Laurens Support Free Knowledge: http://wikimediafoundation.org/wiki/Donate -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.centos.org/pipermail/centos/attachments/20110314/ad54e08b/attachment-0001.html>

Hi James, I just tried fixing my script and added library(BiocManager) before library(ggbreak), then rebuilt the image, and am still getting the same error. Error in library(ggbreak) : there is no package called 'ggbreak' Execution halted I will say that when I ran docker exec docker_container_id R -e "installed.packages()" I get the following: Package

...TRUE; to if(mlen >= 2 && con->mode[1] == '+') con->canwrite = TRUE; This explained my earlier R script tests, ie that the only way to write to a file is to truncate it ("w"/"w+" flag) or by appending to it ("a"/"ab"). Regards, Laurens > -----Original Message----- > From: Laurens Leerink > Sent: Friday, May 23, 2003 9:33 AM > To: 'r-help@stat.math.ethz.ch' > Subject: isSeekable returns F on seekable file > > Hi, > > Seems that on RWin 1.7.0 and 1.6.2 isSeekable returns F on binary files,...

Is there a colinearty function implemented in R? I have tried help.search("colinearity") and help.search("collinearity") and have searched for "colinearity" and "collinearity" on http://www.rpad.org/Rpad/Rpad-refcard.pdf but with no success. Many thanks in advance, Peter Lauren.

...e delay seems to be caused by a configuration issue with the LDAP password backend, but I can't figure out what the problem(s) is/are. I have attached the log file of a WinXP client (named Mu) trying to connect to the Samba server (version 3.3.4, running on Debian, called Theta) using the user Laurens. Any insights in what is causing this will be very much appreciated. Sincerely, Laurens

Don't you have to load BiocManager before using it? -----Original Message----- From: R-SIG-Debian <r-sig-debian-bounces at r-project.org> On Behalf Of Gerber, Lauren J Sent: Tuesday, October 15, 2024 9:15 AM To: r-sig-debian at r-project.org Cc: dirk at eddelbuettel.com Subject: Re: [R-sig-Debian] R Package: 'ggbreak' in Dockerfile Hi All, Does anyone have experience

Lauren, I am now back home where looking into these things is a little easier. From your first email to me, I started off with the selenium container you mentioned as your starting point. And that basically is your issue. It is a 'high-level' container, and it sets a user. (Essentially) all other Dockerfiles you have seen and been pointed at are 'lower-level' and operate as root

Hi All, Does anyone have experience successfully installing and loading the R package ?ggbreak? in a Docker container? I ask because I have successfully used the ?ggbreak? package in a script outside the Docker container (on my local computer), but for some reason, I get the following error message when trying to load it using library(ggbreak) or library(?ggbreak?) inside the same script that