search for: knussear

...and turquoise boxes and whiskers. I cannot figure out how to just get black and white to be the default. Can anyone help me with this? Thanks Kenneth E. Nussear Phone 775 784-1703 Ecology, Evolution and FAX 775 784-1369 Conservation Biology/314 knussear at biodiversity.unr.edu Reno, Nevada 89557-0013 http://www.brrc.unr.edu/~knussear/ -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: text/enriched Size: 623 bytes Desc: not available Url : https://stat.ethz.ch/pipermail/r-help/attachme...

...orry that because I have used the same 10 individuals for each daily mean that the daily averages are not independent. Can anyone help? Thanks Kenneth E. Nussear Phone 775 784-4565 Biological Resources FAX 775 784-1369 Research Center/315 knussear at biodiversity.unr.edu Reno, Nevada 89557 http://www.brrc.unr.edu/~knussear/

Hi list, I'm trying to get R to make a graph like the one shown in this pdf, where males are white bars and females are black bars. http://www.brrc.unr.edu/~knussear/mmgraph.pdf I tried barchart, but I couldnt get the bars to share a common x axis. Do you have any suggestions? Thanks for your help Ken

...he dotted lines (?whiskers?) outside of each box, and possible outliers are given by the open circles outside the box. Is this close? Thanks Kenneth E. Nussear Phone 775 784-1703 Ecology, Evolution and FAX 775 784-1369 Conservation Biology/314 knussear at biodiversity.unr.edu Reno, Nevada 89557-0013 http://www.brrc.unr.edu/~knussear/

...irectly from cran. It has an editor that recognizes and highlights commands. Package manager and installer, help viewer and search box, and lots of menu drop downs for opening files, changing directories, etc. Ken -- Kenneth E. Nussear Research Herpetologist, USGS http://homepage.mac.com/knussear/ (702) 564-4515 Fax (702) 564-4600 knussear@usgs.gov [[alternative HTML version deleted]]

Hi I'm trying to fit a model in betareg and I'm getting errors, but have no idea what they mean or how to solve them. Does anyone have experience with this? > model <- betareg(ACT ~ ST*SoilT, data = actDL_F) Warning messages: 1: In sqrt(W) : NaNs produced 2: In sqrt(W) : NaNs produced 3: In sqrt(1 + phihat) : NaNs produced data summaries don't give any na's or problems I

Hi List I'm running a series of mixed models using lme, and I wonder if there is a way to sort them by AIC prior to testing using anova (lme1,lme2,lme3,....lme7) other than by hand. My current output looks like this. anova (lme.T97NULL.ml,lme.T97FULL.ml,lme.T97NOINT.ml,lme.T972way.ml,lme.T97fc. ml, lme.T97ns.ml, lme.T97min.ml) Model df AIC BIC logLik

Hi Trying to finish a simple xyplot, but the key colors don't match those specified on the plot. I have only been able to change the color of the key text, but not the points. Hours <- c (25.88,32.31,24.04,23.27,16.64,19.75,27.25,17.9,20.45,29.65,20.83,27.17, 28.42,28,18.85,17.4,19.75,25.34,23.23,29.85,28.96,25.6,14.67,20.55,25.77 ,

Hi Wondering if anyone knows of a package that does Nested Clade Analysis? Thanks -- View this message in context: http://www.nabble.com/Nested-Clade-Analysis-tp20637180p20637180.html Sent from the R help mailing list archive at Nabble.com.

Hi list, I'm attempting to re-create a Repeated Measures Compositional Analysis as described in the work by Aebischer et. al. (Ecology. 1993. 74(5): 1313-1325). In this paper they describe transitions of data into a log ratio difference matrix, from which they obtain two matrices using a monova routine. I am able to produce the second of the two matrices, but I'm having trouble

...+44 1865 272595 > > > > ------------------------------ > > Message: 11 > Date: Tue, 1 May 2007 08:44:59 -0400 > From: "Kuhn, Max" <Max.Kuhn@pfizer.com> > Subject: Re: [R] Independent contrasts from lme with interactions > To: "Ken Nussear" <knussear@usgs.gov>, <r-help@stat.math.ethz.ch> > Message-ID: > < > 71257D09F114DA4A8E134DEAC70F25D3083B819A@groamrexm03.amer.pfizer.com> > Content-Type: text/plain; charset="us-ascii" > > Ken, > > Take a look at the just released contrast package...

Hi list, I'm trying to limit the z axis plotted using persp3d {rgl} to a given range. I'm trying the following statement persp3d(g0,pa,D, xlim=range(g0),ylim=range(pa), zlim=range (zbounds),col="lightblue") where g0 and pa are both a range of 20 numbers from 0.05 to 1, and D is a 20 x 20 matrix with values ranging from 0 to 30000. I'm trying to set a cap on the Z

Hi All, I'm trying to use the geoRglm package to run a poisson spatial glm on a dataset with several covariates. When I run without covariates I have no problems. control1.data.geo <- mcmc.control(S.scale=0.2, thin = 1) model1.data.geo <- list(cov.pars = c(1,1), beta=c(1), family="poisson") test1.model1 <- glsm.mcmc(data.geo, model=model1.data.geo,

Hi cross posting from sig geo , because I really need help! I'm using geoR for some spatial linear models and I'm getting surprisingly optimistic values from the spatial models relative to the non-spatial, even when the models appear to be performing about equally (by AIC comparison) For example This model relating encounter rates of lizards to a soil substrate parameter gives >

I tried this over a the grasp users yahoo group and got no response....So I wonder if anyone here knows about grasper I keep getting this error when trying to run a model. Error in smooth.construct.tp.smooth.spec(object, data, knots) : Too many knots for t.p.r.s term: see `gam.control' to increase limit, or use a different basis, or see large data set help for `gam'. I'm using

I'm having trouble saving the image files when using rm150 under OSX. I had the same problem with rm14*, so it is not a new issue to me. When trying to save the image file I am prompted to give a name for the file. R then says that the file could not be saved, but will be stored in filenameTMP, where filename is the name I gave in the previous dialog box. This also occurs when attempting

Trying to use contrast to look at differences within an lme lme.fnl.REML <- lme(Max ~ S + Tr + Yr + Tr:Yr, random = ~1 |TID, method = "REML") I have three levels of Tr I'm trying to contrast among different years (R, T97, T98), years = 1997-1999, so I'm interested in contrasts of the interaction term. > anova(lme.fnl.REML) numDF denDF F-value

Hi All, I've been searching the help archives but haven't found a workable solution to this problem. I'm running an lme model with the following call: >lme.fnl <- lme(Max ~ S + Tr + Yr + Tr:Yr, random = ~1 |TID) > anova(lme.fnl) numDF denDF F-value p-value (Intercept) 1 168 19255.389 <.0001 S 1 168 5.912 0.0161 Tr