search for: khush

...38,col = "green", pch=23, cex="9", lty="solid", lwd=14,lend=2) When I source("script.R"), I got the image on interface but I do not want to use screenshot option to save the image? How can save the output to .pdf or .jpg format? Thanks in advance Thank you Khushwant [[alternative HTML version deleted]]

Hi, How to mark points on x axis of a graph keeping x axis as constant and changing y from y1 to y2 respectively. I want to highlight the area from y1 to y2. Any suggestions Thank you Jeet [[alternative HTML version deleted]]

...ets with string, for which I need to draw the venn diagram. there are tools available to draw venn diagram online, but limited to three sets. I can also generate venn for three from limma package, but do not know how to proceed with five subsets. Help me in drawing the same any script . Thank you Khush [[alternative HTML version deleted]]

Dear All, I am newbie to R, and I wanted to plot a barplots with R and in such a way that It will also show me position which I can plot on the bar line. Here is my code that I am using to plot, > chromosome <- c(40.2, 35.6, 36.1, 29.6, 31, 29.6, 31, 29.4, 28.2, 23, 23, 28.2) >barplot (chromosome, col="purple", xlab="Oryza sativa Chromosomes", border = NA, space =

...ng '/home/fedora/R/i386-redhat-linux-gnu-library/2.11' Warning: unable to access index for repository http://cran.csdb.cn/src/contrib Warning message: In getDependencies(pkgs, dependencies, available, lib) : package ‘gplots’ is not available any suggestion will be appreciable. Thank you Khush [[alternative HTML version deleted]]

...... %PDF-1.4 %<81>â<81>ã<81>Ï<81>Ó\r 1 0 obj << /CreationDate (D:20100902122215) /ModDate (D:20100902122215) /Title (R Graphics Output) /Producer (R 2.11.1) /Creator (R) how to reconvert it to the my actual code?? as I do not have backup for it..? Thanks in advance Khushwant [[alternative HTML version deleted]]

Hi, I am making barplots . I am using the default shape of barplots with a pipe but I wants to build bars in various 3d shapes. I have install rgl using install.packages('rgl') for this purpose, but when I am doing library(rgl), it shows Error in library(rgl) : there is no package called 'rgl' What are the other ways to build such plots of variuos shapes. Is that *TeachingDemos

Hi, Can anyone tell me how to set Z-score according to my own requirement as the below code is taking as per the file entries. Any help would be appreciable. library(gplots) x=read.table("final.txt", header=TRUE) mat=data.matrix(x) heatmap.2(mat, col=colorRampPalette(c("green","white","red"))(256), #col=greenred(75), Rowv=TRUE, Colv=FALSE, distfun = dist,

Hello, I am trying to install rgl package under R and getting some errors which is below. > install.packages("rgl") Warning in install.packages("rgl") : argument 'lib' is missing: using '/usr/lib/R/library' trying URL 'http://cran.csie.ntu.edu.tw/src/contrib/rgl_0.91.tar.gz' Content type 'application/x-gzip' length 1677498 bytes (1.6 Mb)

Dear Experts, I am using the below script to generate the heat map of gene expression data. I am using Hierarchical Clustering (hclust) for clustering. Now I want to compare different clustering parameters such as *K-means* clustering, Model Based Clustering, I have two queries: 1. How to incorporate different clustering method in the same code? 2. Is this possible to implement pvclust in the

...ot;" labRow = NULL, labCol = NULL, key=TRUE, keysize=1, density.info=c("none") ) I am giving two color only i.e red and black but when I am try to make the plot it again show in gradients. Therefore, I just want to plot a heat map with two color scheme. Thanks in advance Thank you Khushwant [[alternative HTML version deleted]]

...to arrange the data based on the expression pattern of the genes or some other way, which make some sense out of data. 3. I have some color issues as the number of genes increases the green and black colors are not as much as prominent as red? Thank you so much for your help in advance. Thank you Khushwant -------------- next part -------------- CAF CAS INF INS AP1 AP3 AGM SAP S04 S52 LEF LES ROF ROS GSE SIF SIS At1g01940 107 111 20 27 40 52 27 8 6 24 40 18 67 85 35 56 118 At1g26940 35 27 30 28 15 41 12 73 6 15 21 11 60 35 6 24 77 At1g53720 34 35 16 52 15 27 24 13 3 12 35 6 43 51 1 21 25 At1g537...