search for: khansen

...rs that R CMD build does not allow for --configure-args. In my case, I have a C library installed in a non-standard position, and I need to tell the package where it is. It works fine with R CMD INSTALL, but R CMD build complains Warning: unknown option ?--configure-args=--with-graphviz=/Users/khansen/Source/usr? and the subsequent installation fails with an error. Suggestion: allow R CMD build to accept --configure-args (and probably also --configure-vars) Best, Kasper

Based on some testing it seems to me that if I have a package with a dataset in /data a Sweave vignette in inst/doc (but no associated pdf file) the vignette loads the data in /data through data(dataset) and I do a R CMD build R will try to build the pdf version of the vignette, but will be unable to find the dataset in data because the package is not yet installed. However, if I do

...performance is better on a non-threaded perl. I believe I can compare the spec files and figure out where to edit the new spec file, but I wondered about that "not supported" comment. Is there something "bad" about the non-threading variant? Thanks! Take care, Kurt Hansen khansen at charityweb.net

...vell website: http://www.marvell.com/drivers/search.do It looks like I'll have to recompile the kernel to get this installed. Having read the warnings on the CentOS Wiki, I figured I should ask before building my own kernel for the first time. Do I have other options? Thanks! Kurt Hansen khansen at charityweb.net

...recursive = TRUE) + unlink(file.path(pkgPath), recursive = TRUE) + } building package pkgA ... Error in parse_description_field(desc, "BuildKeepEmpty", keep_empty1) : object 'keep_empty1' not found Execution halted Error: (converted from warning) running command '/Users/khansen/Source/R-2.13-build/bin/R CMD build --keep-empty-dirs /var/folders/E3/E3ZBCIQ9El4LlIR92ARpyE+++TI/-Tmp-//Rtmpw9faGg/Pkgs/pkgA' had status 1 Execution halted Kasper

I am running into a problem with the 00LOCK file and .nfs files. It seemed to be caused by the following R is installed on NFS user A has loaded pkg_A containing a dynamically loaded library user B (the administrator) runs install.packages("pkg_A") as the final part of the installation process the 00LOCK directory is removed this creates a .nfs file because user A has the

Hello, This message just came across on another mailing list I am on. The little dig on Unix as being old and Windows being new got me annoyed so I wanted to reply, but with some real contacts that he asks for at the end. I figured there might be some folks who could help him out. Feel free to reply on list or to me, and I will forward on your contact info. Message follows: " Our

Greetings list- I''ve got a server ''in the mail'' and I see now on the specsheet that it has Marvell Yukon 8056 NICs onboard. Since I cannot seem to find a HCL for Centos 5 or RHEL5 to help verify, I''d like to know if it works ''out of the box'' on CentOS 5.x or is there additional work to make it function (properly)? My searching has revealed

Hi We have been cross-compiling windows packages under Linux using the excellent Makefile and instructions by Tony Rossini and Jun Yan. Specifically we have been cross-compiling c++ code and it used to work. Now the minGW tools located at www.stats.ox.ac.uk/pub/Rtools have changed from version 4 to version 5, and our cross-compiling have stopped working. Inspecting the tarball we are

Hello, I tried making a donation via the centos.org website but was blocked by PayPal. I tried today and a few weeks ago. The error I got in both instances was: "The card you entered cannot be used for this payment. Please enter a different credit or debit card number." This strikes me as a strange response. It didn't say the card was declined; it said it "cannot be

Hi, Could you guide me to upload Rgraphviz library. I have installed Graphviz 2..20.3.1 , even followed the instructions in Read me, but I cannot load the package. There is a error message "This application has failed to start becaues libcdt-4.dll was not found. Re-installing the application may fix this problem", whenever we plan to load the package. Thanks in Advance Deepak

Hi, A little bit off topic here, but I was wondering if anybody knows about a good dedicate server provider, that offers CentOS (but ofcourse) as a os choice, and that is very reliable. I am using SuperbServer, but as of this moment 2007/03/19 1406 America/NewYork time, my server is down do to a power outage at one of their facilities in VA. This is the second outage in less that 5 months.

Hi We are currently embedding a rather large C++ library in R (BioC), and we want some comments on the portability of how we have approach this. First of, we are not really able to do much about the portability of the basic library, which of course is the main question :) We have an approach which seems to work, I just want a bit of feedback on it.... The way we integrate it into R is

I am considering a package with a namespace (Rgraphviz from Bioc). I essentially want to have some error handling for loading the dll, something like wrapping it into tryCatch or similar (reason: see below). Right now I am loading the dynamic libraries by useDynLib in my NAMESPACE file. When I look at the code from loadNamespace, I have the impression that what I want is impossible

>>>>> "K" == Kasper Daniel Hansen <khansen at stat.Berkeley.EDU> writes: K> On Oct 19, 2005, at 3:43 PM, Jeffrey J. Hallman wrote: K> <SNIP> >> Think about it. Once you have a basic math package that can handle >> matrix >> programming and various mathematical functions, building the various...

Full_Name: Derek Elmerick Version: 2.4.0 OS: Windows XP Submission from: (NULL) (38.117.162.243) hello - i have some code that i run regularly using R version 2.3.x . the final step of the code is to build a multinomial logit model. the dataset is large; however, i have not had issues in the past. i just installed the 2.4.0 version of R and now have memory allocation issues. to verify, i ran

...email: luke at stat.uiowa.edu >> Iowa City, IA 52242 WWW: http://www.stat.uiowa.edu >> >> >> >> ------------------------------ >> >> Message: 19 >> Date: Fri, 3 Oct 2008 14:49:17 -0700 >> From: Kasper Daniel Hansen <khansen at stat.berkeley.edu> >> Subject: Re: [Rd] Can DESCRIPTION Maintainer: field contain general >> URL instead of only email address? >> To: William Dunlap <wdunlap at tibco.com> >> Cc: R-devel at stat.math.ethz.ch >> Message-ID: <F5426BA5-BBBF-438E-...

Hello, I'm considering the HP EliteBook 6930 or the Dell Latitude e6400 notebooks for CentOS. I'm planning on using these in a situation in which they are always on, and I want low power and low noise and high reliability. HP claims up to 24 hours battery power and Dell up to 19 hours. I figure this can bridge the gap for most power outages in my neighborhood. I realize that I

Using the IRanges package from Bioconductor and somewhat recent R-2.9.1. ov = IRanges(1:3, 4:6) length(ov) # 3 seq(along = ov) # 1 2 3 as wanted seq_along(ov) # 1! I had expected that the last line would yield 1:3. My guess is that somehow seq_along don't utilize that ov is an S4 class with a length method. The last line of the *Details* section of ?seq has a typeo. Currently it is

I have a few simple questions about the usage of PROTECT, more specifically how careful one needs to be. Simple yes/no answers are fine. Most of the uses I have seen do protection when memory is allocated. But what if one just want to assign a value of another function to a variable. Say eg. that foo is a function that returns a SEXP. Would the following code be fine? SEXP bar;