search for: jlindsey

Hello - I cannot get to www.alpha.luc.ac.be/~jlindsey/rcode.html<http://www.alpha.luc.ac.be/%7Ejlindsey/rcode.html>to obtain and install the repeated library for use of glmm(). Is the web page not active? Can you give me an alternative location to obtain the repeated library? Thank you, Becky Parker [[alternative HTML version deleted]]

I have just placed version 0.2 alpha of my library, dna, on my web page at www.luc.ac.be/~jlindsey/rcode.html The R functions in this library cover most of the basic methods of dna and protein sequence analysis. The library includes ports of CLUSTAL W for multiple sequence alignment and flip for finding open reading frames in a dna sequence. There are an enormous number of interesting and chal...

I have just placed version 0.2 alpha of my library, dna, on my web page at www.luc.ac.be/~jlindsey/rcode.html The R functions in this library cover most of the basic methods of dna and protein sequence analysis. The library includes ports of CLUSTAL W for multiple sequence alignment and flip for finding open reading frames in a dna sequence. There are an enormous number of interesting and chal...

...rmatting in formatC and format From: Prof Brian D Ripley <ripley@stats.ox.ac.uk> Date: Sun, 28 Feb 1999 08:53:34 +0000 (GMT) --Documentation and ``merge'' of format() and formatC() would be desired - MM Directory: Installation * PR# 95 * Subject: patch to 63.2 From: Jim Lindsey <jlindsey@alpha.luc.ac.be> Date: Fri, 15 Jan 1999 11:00:25 +0100 (MET) --An incident where the 0.63.2 patches didn't take. So far the only one. --Maybe caused by patching unclean sources? Directory: Language * PR# 40 * Subject: fac1 : fac2 -- fails {no "cross" anymore in seq.c} From: m...

I have just put the postscript file for the first draft of a manuscript of a course on The Statistical Analysis of Stochastic Processes in Time, as well as the R code to do all of the examples, on my web page at www.luc.ac.be/~jlindsey/manuscripts.html The chapters are Part I Basic principles 1. What is a stochastic process? 2. Normal theory models and extensions. Part II Categorical state space 3. Survival processes. 4. Recurrent events. 5. Discrete-time Markov chains. 6. Event histories. 7. Dynamic models. 8. More comp...

I have just put the postscript file for the first draft of a manuscript of a course on The Statistical Analysis of Stochastic Processes in Time, as well as the R code to do all of the examples, on my web page at www.luc.ac.be/~jlindsey/manuscripts.html The chapters are Part I Basic principles 1. What is a stochastic process? 2. Normal theory models and extensions. Part II Categorical state space 3. Survival processes. 4. Recurrent events. 5. Discrete-time Markov chains. 6. Event histories. 7. Dynamic models. 8. More comp...

...at each time point for each of the individuals. I would like to determine the "state" for each individual at each time point. It looks to me like I should be able to do this with the "hidden" command from the "repeated" package (http://popgen0146uns50.unimaas.nl/~jlindsey/rcode.html), but I have found it a bit confusing to get started. The distributions in the two states are approximately normal with differences in centrality and possibly variance (but I can start by assuming similar variances). Thanks, Sean

>>>>> "Jim" == Jim Lindsey <jlindsey@alpha.luc.ac.be> writes in a private mail to me Jim> That bug in seq() really has shaken my faith in R. How Jim> many other known bugs are there that we on r-help are not informed Jim> of and which can falsify our statistical analyses??? It is Jim> imperative tha...

With 0.63.3, try test <- function(){ fn <- function(a) print("hello") print(is.function(fn)) print(names(formals("fn")))} test() if fn is not quoted in the last line of test, it works properly. test <- function(){ fn <- function() print("hello") formals(fn) <- alist(a=,b=) return(fn)} formals(test()) now try with line 3 of test changed to

...er@stat.math.ethz.ch> Date: Fri, 13 Aug 1999 17:44:48 +0200 Directory: Installation * PR# 290 * Subject: Error compiling R on RS6000 From: pgutwin@us.ibm.com Date: Thu, 30 Sep 1999 21:18:49 +0200 (MET DST) Directory: Language * PR# 105 * Subject: an old bug resurfaces From: Jim Lindsey <jlindsey@alpha.luc.ac.be> Date: Fri, 29 Jan 1999 08:28:32 +0100 (MET) --Model formulas. Proper fix probably requires extensive rewrite of model formula --parser, which would make in non-S-compatible. * PR# 257 * Subject: dimnames names lost when subscripting From: Andreas Weingessel <weingessel@ci.t...

...rmatting in formatC and format From: Prof Brian D Ripley <ripley@stats.ox.ac.uk> Date: Sun, 28 Feb 1999 08:53:34 +0000 (GMT) --Documentation and ``merge'' of format() and formatC() would be desired - MM Directory: Installation * PR# 95 * Subject: patch to 63.2 From: Jim Lindsey <jlindsey@alpha.luc.ac.be> Date: Fri, 15 Jan 1999 11:00:25 +0100 (MET) --An incident where the 0.63.2 patches didn't take. So far the only one. --Maybe caused by patching unclean sources? Directory: Language * PR# 105 * Subject: an old bug resurfaces From: Jim Lindsey <jlindsey@alpha.luc.ac.be&...

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Dear r-helpers, I downloaded http://popgen.unimaas.nl/~jlindsey/rcode/rmutil.tar (it was originally .tgz, but got unzipped by my browser). Can anyone give me detailed instructions on installing this and Lindsey's other packages on R version 2.4.0 (2006-10-03)---(powerpc- apple-darwin8.7.0, locale: C)? _____________________________ Professor Michael K...

The following work if y is an ordinary matrix but not a dataframe: tt <- NULL y <- data.frame(1:20,1:20) rbind(tt,y) gives "incompatible types" error (if the dataframe contains only factor variables, it gives warnings but works) if I initialize instead with tt <- list() it gives a "missing value where logical needed" error. Jim

An executable version 0.6 of my libraries is now available at www.luc.ac.be/~jlindsey/rcode.html This works with MS R0.64.2 and appears possibly to work with R65.0. There is a serious problem with the Fortran compiler as some of the examples for elliptic and carma crash it. These same examples do not crash R63.0 with the library executables of Jan 99. I am releasing this anyway be...

.... R-develers, please CC to Jim Lindsey (on this topic), since he hasn't been part of the R-devel list for a while.. BTW: I will be gone to the snowy mountains, for two weeks by end of Friday.... - Martin --Multipart_Wed_Feb__4_12:25:40_1998-1 Content-Type: message/rfc822 Return-Path: jlindsey@luc.ac.be From: Jim Lindsey <jlindsey@luc.ac.be> Subject: Re: glm(.) / summary.glm(.); [over]dispersion and returning AIC.. To: maechler@stat.math.ethz.ch Date: Wed, 4 Feb 1998 10:15:50 +0100 (MET) In-Reply-To: <199802031049.LAA00411@sophie.ethz.ch> from "Martin Maechler" at F...

1. Try the following in 63.3 y <- rnorm(20) y1 <- y[2:20] y2 <- y[1:19] summary(glm(y1~offset(y2))) summary(glm(y1-y2~1)) Both are the same model, but the first gives the wrong s.e. I don't believe this was a problem in 63.2 2. Besides the strsplit buffer, there appear to be other memory problems causing seg faults. With vsize 12M in batch, I accumulated 9 glm objects in memory,

When I attempt to install the online help for R.99 on Intel RH5.2, I get the following message Substitution loop at /usr/local/src/R/etc/Rdconvlib.pl line 1589, <rdfile> chunk 171 and it stops after a few files. Each time I rerun it, it gets a bit further and gives a different number at the end. I commented out the line 1589 and it works.

When I attempt to install the online help for R.99 on Intel RH5.2, I get the following message Substitution loop at /usr/local/src/R/etc/Rdconvlib.pl line 1589, <rdfile> chunk 171 and it stops after a few files. Each time I rerun it, it gets a bit further and gives a different number at the end. I commented out the line 1589 and it works.

Hi, Suppose I have a matrix, A. Is there an easy way to find A^{n}? I mean, I can do something like: A %*% A %*% A %*% A for A^4, but if I want A^{10} it would be kind of annoying... Cheers, Kevin ------------------------------------------------------------------------------ Ko-Kang Kevin Wang Postgraduate PGDipSci Student Department of Statistics University of Auckland New Zealand