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...e now that I was supposed to twig that the reference was to putting the ?.Rnw' files back into the vignettes directory from the inst/doc directory where they?d been placed in the course of creating the tar.gz file. I am still trying to work out what I need to put into ?.Rinstignore? so that ?.install_extras? is not installed. John Maindonald email: john.maindonald at anu.edu.au phone : +61 2 (6125)3473 fax : +61 2(6125)5549 Centre for Mathematics & Its Applications, Room 1194, John Dedman Mathematical Sciences Building (Building 27) Australian National University, Canberra ACT 02...

Hi Mike, Did you read the relevant section of the official "Writing R Extensions" manual? If so, what about the instructions provided there do you find lacking? Best, Ista On Sun, Feb 18, 2018 at 9:06 PM, Michael Hannon <jmhannon.ucdavis at gmail.com> wrote: > Greetings. The group that I work with has just started using the approach > outlined in Karl Broman's handy

Greetings. The group that I work with has just started using the approach outlined in Karl Broman's handy primer: http://kbroman.org/pkg_primer/pages/vignettes.html to create vignettes for a couple of R packages. This works fine as long as we have a current Rmd version of the vignette. But we have some old PDF documents that we'd like to include as vignettes as well. I'd like

Hello, This is a problem I posted about already some time ago: https://stat.ethz.ch/pipermail/r-devel/2018-September/076786.html Finally, I did had some time to create a minimal package to reproduce the problem that vignettes with child can not be build. https://github.com/wolski/RmarkdownVignetteProblem The problem basically is that while all the vignettes can be build by running

In R 3.1.0 (~April 2014), support for vignettes in inst/doc/ will go away (and probably much sooner for CRAN submission), e.g. checking for old-style vignette sources ... NOTE Vignette sources only in ?inst/doc?: ?R.devices-overview.tex.rsp? A ?vignettes? directory is required as from R 3.1.0 and these will not be indexed nor checked I've been sticking with inst/doc/ for backward compatible

Hello. R-devel, r61697. I am having difficulty interpreting section 1.4 "Writing package vignettes" of the R-exts manual. Specifically, I want to use system.file() in some of my packages to locate a bib file, uncertainty.bib, which is part of the emulator package. I only want to maintain a single .bib file. R-exts says: "All other files needed to re-make the vignette PDFs (such

...figs.*[.]pdf But the question has to be: how did the files get copied into inst/doc? Maybe 'When R CMD build builds the vignettes, it copies these and the vignette sources from directory vignettes to inst/doc. To install any other files from the vignettes directory, include a file vignettes/.install_extras which specifies these as Perl-like regular expressions on one or more lines. (See the description of the .Rinstignore file for full details.)' suggests how? then I get: <<< * checking package vignettes in ?inst/doc? ... WARNING Package vignettes without corresponding PDF/HTML: . ....

I am doing [R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet?; Platform: x86_64-apple-darwin10.8.0 (64-bit)] > R CMD build DAAGviz > R CMD check DAAGviz_1.0.3.tar.gz Without a .Rinstignore file, I get: <<< The following files should probably not be installed: ?figs10.pdf?, ?figs11.pdf?, ?figs12.pdf?, ?figs13.pdf?, ?figs14.pdf?, ?figs5.pdf?, ?figs6.pdf?, ?figs9.pdf?

...rces is now the directory vignettes and not inst/doc: R CMD build will now re-build vignettes in directory vignettes and copy the .Rnw (etc) files and the corresponding PDFs to inst/doc. Further files to be copied to inst/doc can be specified _via_ the file vignettes/.install_extras. o R CMD Sweave now supports a --driver option to select the Sweave driver: the default is equivalent to --driver=RweaveLatex. o R CMD Sweave and R CMD Stangle support options --encoding and --options. o The Rtangle() driver allows output = "stdout" or output =...

...rces is now the directory vignettes and not inst/doc: R CMD build will now re-build vignettes in directory vignettes and copy the .Rnw (etc) files and the corresponding PDFs to inst/doc. Further files to be copied to inst/doc can be specified _via_ the file vignettes/.install_extras. o R CMD Sweave now supports a --driver option to select the Sweave driver: the default is equivalent to --driver=RweaveLatex. o R CMD Sweave and R CMD Stangle support options --encoding and --options. o The Rtangle() driver allows output = "stdout" or output =...