Displaying 7 results from an estimated 7 matches for "hspa6".
2008 Jun 16
2
Creating a Hash from Data.Frame
Hi,
I have the following data frame:
> print(mydatframe)
__DATAFRAME__
V1 V2 V3
1 1007_s_at DDR1 discoidin domain receptor tyrosine kinase 1
2 1053_at RFC2 replication factor C (activator 1) 2, 40kDa
3 117_at HSPA6 heat shock 70kDa protein 6 (HSP70B')
__END__
Is there a way to create a hash with
V2 as Key and V3 as its value?
- Gundala Viswanath
Jakarta - Indonesia
2009 Jun 18
2
Any method to speed up this problem?
Hi all,
Suppose I have a vector like this:
[1] "STAT1" "STAT1" "STAT1" "STAT1" "GAPDH" "GAPDH" "GAPDH" "ACTB"
"ACTB"
[10] "ACTB" "DDR1" "RFC2" "HSPA6" "PAX8" "GUCA1A" "UBE1L" "THRA"
"PTPN21"
[19] "CCL5" "CYP2E1" "STAT1" "THRA" "PAX8"
I would like to produce a vector such that it has the same length as the one
above but it tells me...
2008 Jun 16
1
Separator with " | " for read.table
...I have the following data file to be parsed and captured as a data frame:
__DATA__
#GDS_ID GENE_NAME GENE_DESCRIPTION GENE_FUNCTION
1007_s_at | DDR1 | discoidin domain receptor tyrosine kinase 1 | protein-coding
1053_at | RFC2 | replication factor C (activator 1) 2, 40kDa | protein-coding
117_at | HSPA6 | heat shock 70kDa protein 6 (HSP70B') | protein-coding
__END__
In particular it is separated by " | " , namely - space, bar, space.
However I tried this without avail:
geneinfo <- read.table("mydata.txt", sep=" | ", comment.char="\#")
print(geneinf...
2008 Jun 24
1
Binding result of a function to a data frame
...or
and data
> print(mydata)
V1 V2 V3 V4 V5
1 1007_s_at DDR1 2865.1 2901.3 1978.3
2 1053_at RFC2 103.6 81.6 108.0
3 117_at HSPA6 222.0 222.5 306.2
4 121_at PAX8 2146.3 2457.2 1901.9
5 1255_g_at GUCA1A 226.5 321.2 109.2
6 1294_at UBE1L 296.6 424.6 406.1
7 1316_at THRA 339.9...
2010 Apr 29
1
merged files
...21 6 A_24_P123601
30975848 30975907 RFC2 5982 10 7 1053_at:120:925,
1053_at:504:41,
1053_at:522:871,
1053_at:828:1025,
203696_s_at:291:651 73287845,
73287869,
73287863,
73287881,
73287850 73287821,
73287845,
73287839,
73287857,
73287826 A_23_P93823 73287861 73287802 RFC2 5982 11 7 HSPA6 3310
1 1 A_23_P114903 159762782 159762841 PAX8 7849 12 2 A_23_P210001
113691555 113691496 GUCA1A 2978 6 6 UBA7 7318 24 3
1294_at:1079:379,
1294_at:361:881,
203281_s_at:524:889,
203281_s_at:678:1017,
203281_s_at:68:1153 49818386,
49818398,
49818378,
49818434,
49818422 4981836...
2008 May 30
1
A question about *read.table()*
...ists of 22277 rows, 72 columns.
> exprSet <- read.table('70mel_GSA.txt', row.names = 1,header =FALSE)
> dim(exprSet)
[1] 22277 71
> exprSet[1:4,1:4]
V2 V3 V4 V5
GENE1 DDR1 10.215229 8.546666 9.207030
GENE2 RFC2 8.028489 8.175520 9.090902
GENE3 HSPA6 4.633769 4.822625 5.125172
GENE4 PAX8 6.121433 6.396281 6.000987
The two txt files are of similar format. The only difference so far I can
tell is that
the second file is of more rows and columns. Other than that, they are
basically
the same. But I don't know what is the issue with the firs...
2010 Apr 29
0
merge on criteria
...21 6 A_24_P123601
30975848 30975907 RFC2 5982 10 7 1053_at:120:925,
1053_at:504:41,
1053_at:522:871,
1053_at:828:1025,
203696_s_at:291:651 73287845,
73287869,
73287863,
73287881,
73287850 73287821,
73287845,
73287839,
73287857,
73287826 A_23_P93823 73287861 73287802 RFC2 5982 11 7 HSPA6 3310
1 1 A_23_P114903 159762782 159762841 PAX8 7849 12 2 A_23_P210001
113691555 113691496 GUCA1A 2978 6 6 UBA7 7318 24 3
1294_at:1079:379,
1294_at:361:881,
203281_s_at:524:889,
203281_s_at:678:1017,
203281_s_at:68:1153 49818386,
49818398,
49818378,
49818434,
49818422 4981836...