Displaying 4 results from an estimated 4 matches for "hgu95av2prob".
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hgu95av2probe
2010 Jul 06
1
Error in affypdnn package
...aterial. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
registering new summary method 'pdnn'.
registering new pmcorrect method 'pdnn' and 'pdnnpredict'.
> library(hgu95av2probe)
Loading required package: AnnotationDbi
> energy.file <- system.file("exampleData", "pdnn-energy-parameter_hg-u95av2.txt", package = "affypdnn")
> params.chiptype <- pdnn.params.chiptype(energy.file, probes.pack = "hgu95av2probe")
Calculating ch...
2015 Apr 18
2
truncated warning messages
...s.UCSC.mm10?,
?BSgenome.Dmelanogaster.UCSC.dm3.masked?,
?BSgenome.Hsapiens.UCSC.hg18.masked?,
?BSgenome.Hsapiens.UCSC.hg19.masked?,
?BSgenome.Mmusculus.UCSC.mm9.masked?,
?BSgenome.Scerevisiae.UCSC.sacCer2?, ?BSgenome.Hsapiens.NCBI.GRCh38?,
?BSgenome.Rnorvegicus.UCSC.rn5?, ?drosophila2probe?, ?hgu95av2probe?,
?hgu95av2cdf?, ?SNPlocs.Hsapiens.dbSNP.20100427?,
?SNPlocs.Hsapiens.dbSNP.20101109?, ?SNPlocs.Hsapiens.dbSNP.20110815?,
?SNPlocs.Hsapiens.dbSNP141.GRCh38?,
?XtraSNPlocs.Hsapiens.dbSNP141.GRCh38?, ?org.Sc.sgd.db?, ?org.Mm.eg.db?,
?org.At.tair.db?, ?hom.Hs.inp.db?, ?GO.db?,
?TxDb.Hsapiens.UC...
2019 Jul 04
2
Fwd: Fedora 31 System-Wide change proposal: Automatic R runtime dependencies
...nfoDb
* R-GenomeInfoDbData
* R-GenomicAlignments
* R-GenomicFeatures
* R-GenomicRanges
* R-getPass
* R-ggplot2
* R-ggplot2movies
* R-gh
* R-git2r
* R-globals
* R-glue
* R-gmailr
* R-gmp
* R-gplots
* R-gsl
* R-gss
* R-gtable
* R-gtools
* R-haven
* R-here
* R-hexbin
* R-hgu133acdf
* R-hgu95av2cdf
* R-hgu95av2probe
* R-highlight
* R-highr
* R-hms
* R-htmltools
* R-htmlwidgets
* R-httpuv
* R-httr
* R-hunspell
* R-igraph
* R-import
* R-ini
* R-inline
* R-IRanges
* R-IRdisplay
* R-IRkernel
* R-iterators
* R-itertools
* R-jose
* R-jpeg
* R-jqr
* R-jsonlite
* R-knitr
* R-labeling
* R-lambda.r
* R-later
* R-lazyev...
2007 Oct 30
6
trouble installing building packages from source using R 2.6.0 on Ubuntu Gutsy AMD64
I have recently upgraded to Ubuntu Gutsy and, for the first time, am
using a 64-bit installation. After failing miserably to install R from
source, not a problem for me in the past with a 32-bit install, I went
the route of using the Debian Etch build. This went smoothly, but I am
unable to update my numerous R and BioConductor packages, getting
non-zero exit status errors on each package. Is