search for: hgu133acdf

Hi, While trying to install hgu133acdf- windows package in R im getting the following error and unable to install the same. > source("http://bioconductor.org/biocLite.R") > biocLite("hgu133acdf") Using R version 2.10.0, biocinstall version 2.5.10. Installing Bioconductor version 2.5 packages: [1] "hgu...

...hecking for file 'nvNormalize/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'nvNormalize' version '1.0' * checking package name space information ... OK * checking package dependencies ... ERROR Namespace dependencies not required: affy affyio hgu133acdf hgu133plus2cdf simpleaffy See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. I've looked at the manual but cannot figure out if the problem is in the way I have specified dependencies in NAMESPACE or DESCRIPTION....

...TIME=English_United States.1252 attached base packages: [1] "tools" "stats" "graphics" "grDevices" "utils" [6] "datasets" "methods" "base" other attached packages: affy affyio Biobase hgu133acdf hgu133a "1.14.0" "1.4.0" "1.14.0" "1.16.0" "1.16.0" ====================================== Benjamin Otto University Hospital Hamburg-Eppendorf Institute For Clinical Chemistry Martinistr. 52 D-20246 Hamburg Tel.: +49 40 42803 1908...

Hi everyone, My purpose is to read a .CEL file into R. The .CEL file was created from a .CAB by using DTT software found on Affymetrix website I read the .CEL file in R using ReadAffy as follows: > d2=ReadAffy(widget=T) and I complete the fields as required. It does not complain. For example I could find the description: > description(d2) Experimenter name: BB Laboratory: FFL Contact

...eepack * R-generics * R-GenomeInfoDb * R-GenomeInfoDbData * R-GenomicAlignments * R-GenomicFeatures * R-GenomicRanges * R-getPass * R-ggplot2 * R-ggplot2movies * R-gh * R-git2r * R-globals * R-glue * R-gmailr * R-gmp * R-gplots * R-gsl * R-gss * R-gtable * R-gtools * R-haven * R-here * R-hexbin * R-hgu133acdf * R-hgu95av2cdf * R-hgu95av2probe * R-highlight * R-highr * R-hms * R-htmltools * R-htmlwidgets * R-httpuv * R-httr * R-hunspell * R-igraph * R-import * R-ini * R-inline * R-IRanges * R-IRdisplay * R-IRkernel * R-iterators * R-itertools * R-jose * R-jpeg * R-jqr * R-jsonlite * R-knitr * R-labeling...

I have recently upgraded to Ubuntu Gutsy and, for the first time, am using a 64-bit installation. After failing miserably to install R from source, not a problem for me in the past with a 32-bit install, I went the route of using the Debian Etch build. This went smoothly, but I am unable to update my numerous R and BioConductor packages, getting non-zero exit status errors on each package. Is