search for: gviz

Hi, I was using Gviz package to create a boxplot. I understand that Gviz uses "panel.bwplot" to create the boxplot. Is there any way that I can remove the dashed line surrounding each pair of boxplots? Here is some sample code: ############# library(Gviz) thisdata <- matrix(sample(1:100,60),nrow=10,nc...

...k you kindly for such detailed replies. I was looking to overlay data using algorithms so that i am able to tell which genes are differentially expressed due to changes in copy number. I did a pubmed search and found only 7 literature pieces all of which use in-house algorithms. I am yet to explore Gviz since it wouldn't work on R 2.14, would try it after upgrading to R 2.15. Other package - ggbio , work on an input 'Object'. I am not able to figure out what to provide as object - gene expression data matrix as whole and or SNP log2 normalised ratios? Any more help or thoguhts here w...

Hello, Can anyone please suggest any packages in R that can be used to overlay gene expression data on SNP (affymetrix) copy number ? Thanks, Ekta Senior Research Associate Bioinformatics Department Jubilant Biosys Pvt Ltd, #96, Industrial Suburb, 2nd Stage Yeshwantpur, Bangalore 560 022 Ph No : +91-80-66628346 The information contained in this electronic message and in any attachments to this