Displaying 11 results from an estimated 11 matches for "gtr".
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dtr
2009 Nov 15
2
lme model specification
.... .
. . . .
. . . .
2000 1 1 5.12
2000 1 2 2.87
2000 1 3 7.23
. . . .
. . . .
. . . .
2000 4 1 2.48
2000 4 2 3.93
2000 4 3 5.17
that is, I have data Y_{gtr} for g (gene) =1,...,2000 t (treatment) = 1,...,4 and r (replicate) = 1,...,3
I would like to fit the following linear mixed model using lme
Y_{gtr} = \mu_{g} + W_{gt} + Z_{gtr}
where the \mu_{g}'s are fixed gene effects, W_{gt} ~ N(0, \sigma^{2}) gene-treatment interactions, and resi...
Is there some command or alternative using dist.dna in ape package for models not included like GTR?
2011 Apr 12
1
Is there some command or alternative using dist.dna in ape package for models not included like GTR?
Hi,
I am making some DNA distances and I would like to use dist.dna as matrix in
R, but this command does not include models like GTR...
Is there some command or alternative using dist.dna in ape package for
models not included like GTR?
I would appreciate any help given
Thank you very much,
Ignacio Quintero
Laboratorio de biología evolutiva de vertebrados (Evolvert)
Departamento de Ciencias Biológicas
Universidad de los Andes...
2011 Oct 12
0
Read in cluster files (cdt, atr, gtr)
Does anyone know if there is a method available to read in cluster files (cdt, atr and gtr)? I found one method (http://bioinformatics.holstegelab.nl/manuals/R/library/integromicsMethods/html/iMethods.read.tv.html), but it doesn't seem to create an object that can be used by "heatmap."
The reason I'd like to read in cluster files rather than cluster within R is that we...
2008 Aug 31
3
GTR Evolution - Crashing
ok..
Wine : 1.1.3
Game: GTR Evolution - by Simbin
Game loads, can select event's, cannot change car's settings, like ride-height etc, as that screen only shows tte arrows and not the information that changes.. goto drive, and it crashes..
Error below..
Code:
physics at physics:~/.wine/drive_c/Program Files/SimBin...
2007 Apr 06
1
hox to connecte two asterisk server
...s
[iax-calls]
exten=>_037XXX,1,macro(Bienvenu)
exten=>_037XXX,2,Dial(IAX2/serveur_rabat/${EXTEN},${TP_MAX_APPEL},r)
exten=>_037XXX,3,macro(BoiteVocale)
**********************************
file config for the second server looks like the server's A file.
thank you in advance
hind
GTR 2007
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2008 May 08
3
GTR2 in Ubuntu
Hello,
I recently have try to install GTR 2 in Ubuntu.
I have wine 0.9.61 installed in Ubuntu 8.04.
Could you help me to solve this problem?
If you need more details, I am all yours.
neoraptor.
When I launch the game (installation is ok), I obtain the following message:
> fixme:ntdll:NtQuerySystemInformation info_class SYSTEM_HAND...
2012 Apr 11
0
phangorn and calculation of a rate matrix
...er I've repeatdly fail to do it. The aligment is in a phyDat object
containing 30 sequences and 12 states (by using "user-defined" character
states consisting on the 12 letters indicated above). I follow the steps
described in the phangorn-specials vignette but the ratematrix (under a GTR
substitution model) is not calculated. May the problem be that phangorn only
accepts "a","g","c" and "t" as valid states for calculating the matrix? And
in case phangorn could calculate the matrix, how could I do it?
I have a very basic knowledge of R so plea...
2024 Jun 15
1
Hard crash of lme4 in R-devel
...LL, verbose = 0L, control = list(optimizer = "nloptwrap", restart_edge = TRUE, boundary.tol = 1e-05, calc.derivs = TRUE, use.last.params = FALSE, checkControl = list(check.nobs.vs.rankZ = "ignore", check.nobs.vs.nlev = "stop", check.nlev.gtreq.5 = "ignore", check.nlev.gtr.1 = "stop", check.nobs.vs.nRE = "stop", check.rankX = "message+drop.cols", check.scaleX = "warning", check.formula.LHS = "stop"), checkConv = list(check.conv.grad = list(action...
2001 Feb 20
2
Incoming trafic shaping (depending on src IP)
...nd from <the SRC IP of
my VPN> should be shaped at 64Kbit/s, right ?
Where''s my error ? Is there something more simple (eg. with iptables and
packet marking ?)
thx for help :)
____________________________________
''Spyou'' - www.spyou.org - root@spyou.org
#gtr / ircnet.grolier.net - UIN : 6871374
We''ve done so much, for so long, with so little
We''re now qualified to do anything with nothing.
2012 Oct 26
0
Wine release 1.5.16
...; statements.
cmd/tests: Add tests for EQU comparison operator in "if" statements.
cmd/tests: Add tests for NEQ comparison operator in "if" statements.
cmd/tests: Add tests for GEQ comparison operator in "if" statements.
cmd/tests: Add tests for GTR comparison operator in "if" statements.
cmd/tests: Add tests for mixed number/stringified numbers comparisons in "if" statements.
cmd: Correctly set the 'raw' parameter in calls to WCMD_parameter in WCMD_if.
cmd: Get rid of longer needed 'end' p...
1999 Oct 25
0
SAMBA digest 2283
...; 2) Password Problem
> by Menno Scholten <m.scholten@wxs.nl>
> 3) Re: How to find out who is the LOCAL master ???
> by John LeMay <jlemay@njmc.com>
> 4) Re: PDC ability
> by Gerald Carter <cartegw@Eng.Auburn.EDU>
> 5) Hybrid configuration
> by gtroup@rfs.com.au
> 6) Re: semaphores and Solaris 7 8/99
> by Todd Pfaff <pfaff@edge.cis.mcmaster.ca>
> 7) RE: PDC ability
> by "Roeland M.J. Meyer" <rmeyer@mhsc.com>
> 8) Corrupted files with applications using Samba/NetaTalk-Server
> by Lars Martin...