search for: gsm907854

Displaying 2 results from an estimated 2 matches for "gsm907854".

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2018 May 03
0
download.file does not process gz files correctly (truncates them?)
...ile() function inserts an extra byte. There's no real obvious pattern in how these bytes are added, but the file downloaded using download.file() is actually larger (in this case by about 8 kb). The file xxx_inR.CEL.gz is read in using: setwd("E:/Temp/genexpr/Compare") id <- "GSM907854" flink <- paste0(" https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSM907854&format=file&file=GSM907854%2ECEL%2Egz ") fname <- paste0(id,"_inR.CEL.gz") download.file(flink, destfile = fname) The file xxx_direct.CEL.gz is downloaded from https://w...
2018 May 02
7
download.file does not process gz files correctly (truncates them?)
Dear all, I've noticed by trying to download gz files from here : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM907811 At the bottom one can download GSM907811.CEL.gz . If I download this manually and try oligo::read.celfiles("GSM907811.CEL.gz") everything works fine. (oligo is a bioConductor package) However, if I download using download.file("