search for: gsm907811

Displaying 5 results from an estimated 5 matches for "gsm907811".

download.file does not process gz files correctly (truncates them?)
2018 May 02
7
download.file does not process gz files correctly (truncates them?)
Dear all, I've noticed by trying to download gz files from here : https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM907811 At the bottom one can download GSM907811.CEL.gz . If I download this manually and try oligo::read.celfiles("GSM907811.CEL.gz") everything works fine. (oligo is a bioConductor package) However, if I download using download.file(" https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSM...
download.file does not process gz files correctly (truncates them?)
2018 May 03
0
download.file does not process gz files correctly (truncates them?)
On 05/02/2018 03:21 PM, Joris Meys wrote: > Dear all, > > I've noticed by trying to download gz files from here : > https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM907811 > > At the bottom one can download GSM907811.CEL.gz . If I download this > manually and try > > oligo::read.celfiles("GSM907811.CEL.gz") > > everything works fine. (oligo is a bioConductor package) > > However, if I download using > > download.file(&q...
download.file does not process gz files correctly (truncates them?)
2018 May 03
0
download.file does not process gz files correctly (truncates them?)
...It seems like a such a simple fix to such a common "mistake". Henrik On Thu, May 3, 2018, 00:44 Joris Meys <jorismeys at gmail.com> wrote: > Dear all, > > I've noticed by trying to download gz files from here : > https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM907811 > > At the bottom one can download GSM907811.CEL.gz . If I download this > manually and try > > oligo::read.celfiles("GSM907811.CEL.gz") > > everything works fine. (oligo is a bioConductor package) > > However, if I download using > > download.file("...
download.file does not process gz files correctly (truncates them?)
2018 May 03
0
download.file does not process gz files correctly (truncates them?)
...2018 at 2:10 PM, Martin Morgan <martin.morgan at roswellpark.org > wrote: > > > On 05/02/2018 03:21 PM, Joris Meys wrote: > >> Dear all, >> >> I've noticed by trying to download gz files from here : >> https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM907811 >> >> At the bottom one can download GSM907811.CEL.gz . If I download this >> manually and try >> >> oligo::read.celfiles("GSM907811.CEL.gz") >> >> everything works fine. (oligo is a bioConductor package) >> >> However, if I download u...
download.file does not process gz files correctly (truncates them?)
2018 May 03
0
download.file does not process gz files correctly (truncates them?)
...ays. If I need to run other tests, please let me know. Kind regards Joris On Wed, May 2, 2018 at 9:21 PM, Joris Meys <jorismeys at gmail.com> wrote: > Dear all, > > I've noticed by trying to download gz files from here : > https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM907811 > > At the bottom one can download GSM907811.CEL.gz . If I download this > manually and try > > oligo::read.celfiles("GSM907811.CEL.gz") > > everything works fine. (oligo is a bioConductor package) > > However, if I download using > > download.file("h...