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2012 May 24
3
transform 1 col to 2 col
Dear All How can I transform 1 column to 2 columns in R? 211217_s_at GO:0005249 211217_s_at GO:0005251 211217_s_at GO:0005515 211217_s_at GO:0015271 211217_s_at GO:0030955 211217_s_at GO:0005249 211217_s_at GO:0005251 211217_s_at GO:0005515 211217_s_at GO:0015271 211217_s_at GO:0030955 Best Wishes, Soheila [[alternative HTML version deleted]]
2020 Oct 17
2
Re: Build failure of libnbd
[Adding libguestfs mailing list] I reproduced it locally - the difference was installing "gcc-go". I only had golang-bin installed previously. With gcc-go installed: ../run go install libguestfs.org/libnbd write of Go pointer 0xc000016060 to non-Go memory 0x7f5fe8297390 fatal error: Go pointer stored into non-Go memory runtime stack: runtime_mstart
2023 Aug 11
2
[libnbd PATCH] golang: Bump minimum Go version to 1.17
Go 1.17 or newer is required to use unsafe.Slice(), which in turn allows us to write a simpler conversion from a C array to a Go object during callbacks. To check if this makes sense, look at https://repology.org/project/go/versions compared to our list in ci/manifest.yml, at the time I made this commit: Alpine 3.15: 1.17.10 AlmaLinux 8: 1.19.10 CentOS Stream 8: 1.20.4 Debian 10: 1.11.6 Debian
2011 Oct 24
1
heatmap for plotting categorical matrix
Hi there, I have a matrix like this: > a4[1:20, 1:5] 194 211 294 314 315 GO:0000003 1 1 1 1 1 GO:0000072 0 0 0 0 0 GO:0000076 1 0 0 0 0 GO:0000082 1 3 1 1 1 GO:0000083 1 0 0 0 1 GO:0000086 0 1 0 1 1 GO:0000114 0 0 0 0 0 GO:0000115 0 0 0 0 0 GO:0000117 0 0 0 0 0 GO:0000160 0 0 1 0 0
2006 Jan 20
4
read.table with ":" in column names (PR#8511)
Full_Name: emiel ver loren Version: 2.2.0 OS: Windows XP Submission from: (NULL) (145.117.31.248) Dear R-community and developers, I have been trying to read in a tab delimeted file where the column names and the row names are of the form "GO:0000051" (gene ontology IDs). When using: > gomat<-read.table("test.txt") > colnames(gomat)[1] [1] "GO.0000051"
2010 Jan 21
1
Merging and extracting data from list
Hello R-help group, I have a question about merging lists. I have two lists: Genes list (hSgenes) name chr strand start end transStart transEnd symbol description feature ENSG00000223972 1 1 11874 14412 11874 14412 DEAD/H box polypeptide 11 like 1DEAD/H box polypeptide 11 like 3DEAD/H box polypeptide 11 like 9 ;;
2020 Sep 06
8
some questions about R internal SEXP types
Hello, I am writing an R/Go interoperability tool[1] that work similarly to Rcpp; the tool takes packages written in Go and performs the necessary Go type analysis to wrap the Go code with C and R shims that allow the Go code to then be called from R. The system is largely complete (with the exception of having a clean approach to handling generalised attributes in the easy case[2] - the less
2007 Oct 14
25
can I configure smb.conf to always publish share files with -rw-rw-rw- permission ?
Hi, I use samba to share some files between some clients. I would like than these files are always view with -rw-rw-rw- rights by all clients event if someone change file access permissions. Can I configure smb.conf to do that ? Thanks for your help. Stephane
2014 Nov 19
14
[LLVMdev] Proposal: add Go frontend subproject based on llgo
Hi all, I'd like to propose the contribution of a Go frontend subproject to the LLVM project, based on the existing llgo project at https://github.com/go-llvm/llgo . As with the previous contribution of the Go bindings, I have obtained permission from all llgo contributors whose code is part of this contribution, to contribute their changes to the LLVM project and relicense their changes
2014 Oct 08
3
[LLVMdev] Proposal: bindings for the Go programming language
Hi all, I'd like to propose that we add an official set of Go bindings to the LLVM project. These bindings are based on the existing "gollvm" project [1]. (Note that all contributors to the gollvm project have agreed to relicense their changes under the LLVM license and submit them to the LLVM project.) The bindings would live in the LLVM tree under the bindings/go directory. One
2004 Oct 12
2
Why I can't retrieve GO identifier correctly?
Hello, R experts, I tried to retrieve all biological process GO terms at level 3 starting "biological process" as level 1 using the code as bellows: 1 library(GO) 2 library(GOstats) 3 level2<-getGOChildren("GO:0008150")$"GO:0008150"$Children 4 for ( i in 1:length(level2)) { 5 level3 <- getGOChildren(level2[i])$level2[i]$Children 6 for ( j in
2009 Jun 22
5
Further .NET woes
Further to advice from the list, I tried using winetricks. Below you can see a list of available packages and the one I felt was the answer (mono is the linux implementation of .NET). Can anyone tell me what I am doing wrong ? andrew at zeus:~/Download/Fictionwise/Mobipocket$ winetricks Usage: /usr/bin/winetricks [options] package [package] ... This script can help you prepare your system
2005 Mar 30
1
Installing GO 1.7.0
I'm in the process of packaging R (and R modules) for future inclusion in Fedora Extras, and I've managed to get several hundred modules installed without issue, however, the GO metadata package is refusing to comply. Since I'm packaging this in rpm format, I can't use any of the automated functions for build, I've got to do it locally through R. The following steps work for
2020 Sep 08
0
some questions about R internal SEXP types
On 9/8/20 11:47 AM, Dan Kortschak wrote: > Thanks, Tomas. > > This is unfortunate. Calling between Go and C is not cheap; the gc > implementation of the Go compiler (as opposed to gccgo) uses different > calling conventions from C and there are checks to ensure that Go > allocated memory pointers do not leak into C code. For this reason I > wanted to avoid these if at all
2014 Oct 09
2
[LLVMdev] Proposal: bindings for the Go programming language
> Importing this path would cause 'go get' to check out LLVM plus the bindings > from SVN using the mechanism described in [3]. We would check index.html > files into the www repository to support this. > > There doesn't seem to be a good way to build complex C++ projects such as LLVM > using 'go get', so there is a script (update_llvm.sh) that builds LLVM and
2018 Apr 04
2
glusterd2 problem
Hello! Installed packages from SIG on centos7 , at first start it works, but after restart- not: ?glusterd2 --config /etc/glusterd2/glusterd2.toml DEBU[2018-04-04 09:28:16.945267] Starting GlusterD???????????????????????????? pid=221581 source="[main.go:55:main.main]" version=v4.0.0-0 INFO[2018-04-04 09:28:16.945824] loaded configuration from file???????????????
2014 Nov 02
2
[LLVMdev] So I just did a normal 'ninja check' with a CMake build that enables ASan and the go bindings tests are... busted...
Specifically, the test is causing a link to occur for CGO stuff. It has been running 8 minutes now with Gold, and is producing a 400mb .o file afaict: % du -hs /tmp/go-build703430446/ llvm.org/llvm/bindings/go/llvm/_test/_obj_test/_cgo_.o 397M /tmp/go-build703430446/ llvm.org/llvm/bindings/go/llvm/_test/_obj_test/_cgo_.o What am I doing wrong here? -------------- next part -------------- An
2020 Oct 17
0
Re: Build failure of libnbd
On Sat, Oct 17, 2020 at 08:48:40AM +0100, Richard W.M. Jones wrote: > [Adding libguestfs mailing list] > > I reproduced it locally - the difference was installing "gcc-go". > I only had golang-bin installed previously. With gcc-go installed: > > ../run go install libguestfs.org/libnbd > write of Go pointer 0xc000016060 to non-Go memory 0x7f5fe8297390 >
2019 Jan 03
1
Golang libvirt bindings problem
Hello everybody! First, allow me to wish you all a Happy New year! I have a problem with a small app that I wrote in Go and which uses libvirt go bindings. Actually, the problem exists only when I want to compile the code statically. Basically, when CGO_ENABLED=0 is exported, go (running go test, go run, go build) complains: undefined: libvirt.NewConnect When I try to compile the source
2020 Oct 17
2
Re: Build failure of libnbd
On Sat, Oct 17, 2020 at 09:00:30AM +0100, Richard W.M. Jones wrote: >On Sat, Oct 17, 2020 at 08:48:40AM +0100, Richard W.M. Jones wrote: >> [Adding libguestfs mailing list] >> >> I reproduced it locally - the difference was installing "gcc-go". >> I only had golang-bin installed previously. With gcc-go installed: >> >> ../run go install