search for: gml

Hello, I am exporting a graph in "gml" format from igraph 0.5.5. When I open the file in Cytoscape v.2.7 I can't map the color attribute that I assign to the graph when I export it from igraph. Could anyone help me in this? Thanks. -- Warm Regards, Sandeep Amberkar BioQuant,BQ26, Im Neuenheimer Feld 267, D-69120,Heidelberg T...

...xmlns="urn:ietf:params:xml:ns:pidf" xmlns:gp="urn:ietf:params:xml:ns:pidf:geopriv10" xmlns:gbp="urn:ietf:params:xml:ns:pidf:geopriv10:basicPolicy" xmlns:cl="urn:ietf:params:xml:ns:pidf:geopriv10:civicAddr" xmlns:gml="http://www.opengis.net/gml" xmlns:dm="urn:ietf:params:xml:ns:pidf:data-model" entity="pres:alice at atlanta.example.com"> <dm:device id="target123-1"> <gp:geopriv> <gp:location-info>...

I realize that matrix indexing has been addressed in various flavors, but I''m stumped and didn''t find anything in the archives. It''s not clear if it is an igraph issue or a more general problem. Thanks in advance for your patience. I am using igraph to read a gml file (http://www-personal.umich.edu/~mejn/netdata/football.zip ). The gml file contains vertex attributes (conference and team) that are provided as character/integer values. I would like to build a matrix of dimension (length.team, length.conference) where the elements are zero except for 1'&...

Hi, is there anyone here who succeed to run any 3D software at good speed with such 3D hardware ? On my side, 3D accelleration is ok with Xorg and pure linux game (xmoto for example run really fine). Is there anything to do with Wine to allow programs runs under it to work as "native" Linux software ? Have I miss something somewhere ? (I think of wine compilation and especially

Hi there, How may I smooth spline two vectors with the smoothing parameter selected by generalized maximum likelihood (GML) .? Thanks a lot. -- View this message in context: http://r.789695.n4.nabble.com/Smoothing-spline-with-smoothing-parameters-selected-by-generalized-maximum-likelihood-tp4210679p4210679.html Sent from the R help mailing list archive at Nabble.com.

I have compiled R version 1.3.1 on a Linux system. No errors or warnings are reported. However, "make check" fails thus: ===== make[5]: Leaving directory `/proj/informatics-build/GML/R/R-1.3.1/src/library' running code in base-Ex.R ... ../../bin/R --vanilla < base-Ex.R > base-Ex.Rout make[4]: *** [base-Ex.Rout] Error 139 ===== The base-Ex.Rout being produced at this point ends with: ===== > ## 1-d tables > (Poiss.tab <- table(N = rpois(200, lam= 5))) N...

Dear Catarina, I prefer to leave the AIC value as NA for the tweedie GLM family because it takes extra time to compute and is only occasionally wanted. It's easy to compute the AIC yourself using the dtweedie() function of the tweedie package. Best wishes Gordon At 03:05 AM 14/08/2007, Catarina Miranda wrote: >Dear Gordon; > >I have also sent this email to R help mailing list,

...e, if it makes any difference, is a VPN built out of Smoothwall and IP COP Linux firewalls using Zyxel routers. So, any ideas anybody on how I can sort this out? Any input much appreciated! Regards, Greg Conway. -- +-----------------------------------+ | Greg Conway, Technical Director | | GML Networking Technologies | +-----------------------------------+ Email/MSN: mailto:greg@gmlnt.com ICQ#: 100219981 mobile tel.: +44 (0) 7974 666 967 mobile fax: +44 (0) 7970 087 935 GML support: +44 (0) 1255 851 999 Internet: http://www.gmlnt.com office te...

Dear R-list. I'm doing af logistic analyses using gml. The model explaines variations in Adverse events infections (0 og 1) using age as explanatory variable. model2d<-glm(formula=AEorSAEInfecBac~Age,family=binomial("logit"),data=emrisk) I want to get predictions with 95% confidence limits for age 30 and age 60. I've been reading...

...out.o drl_layout_3d.o drl_parse.o dsaitr.o dsapps.o dsaup2.o dsaupd.o dsconv.o dseigt.o dsesrt.o dseupd.o dsgets.o dsortc.o dsortr.o dstatn.o dstats.o dstqrb.o dvout.o eigen.o error.o evolver_cit.o f2c_dummy.o fast_community.o feedback_arc_set.o flow.o foreign-dl-lexer.o foreign-dl-parser.o foreign-gml-lexer.o foreign-gml-parser.o foreign-graphml.o foreign-lgl-lexer.o foreign-lgl-parser.o foreign-ncol-lexer.o foreign-ncol-parser.o foreign-pajek-lexer.o foreign-pajek-parser.o foreign.o forestfire.o fortran_intrinsics.o games.o gengraph_box_list.o gengraph_degree_sequence.o gengraph_graph_molloy_ha...

...t;> Any ideas? > > Need to see a lot more logs, specifically, the items before that Error > occurs. Thanks, Tom. Below, you can find more logs: --------------------- # define strdup igraph_i_strdup In file included from /usr/include/string.h:634:0, from src/foreign-gml-parser.y:54: /usr/include/bits/string2.h:208:0: note: this is the location of the previous definition # define strdup(s) __strdup (s) gcc -m64 -I/usr/include/R -DNDEBUG -I/usr/local/include -DUSING_R -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Include -ICOLAMD/Include -ISuiteSp...

Hello Everyone! This is my first post to the mailing list so please forgive me if I am a bit deflected from the general format of this mailing list posts. Since I need help in this matter urgently, I would cover up any of my mistakes in posting later. That said, I have a problem in merging 2 graphs that have common nodes between them. I have a graph G1, that have nodes N1 and edge set E1 and

..., can R compute an ANOVA table like for GLM (seems that SAS does it)? The problem is to know whether a factor with more than 2 levels is significant or not. Can I consider such a factor as significant if at least one modality (using a Wald-test) is significant? 3) Some models can be fitted with a gml but not with a gee? Is there any explanation for that? Any answer would be greatly appreciated, Christophe ------------------------------------------------------------------------ Bonenfant Christophe Laboratoire de Biom??trie et Biologie Evolutive UMR CNRS 5558 - Universit?? Claude Bernard L...

..., can R compute an ANOVA table like for GLM (seems that SAS does it)? The problem is to know whether a factor with more than 2 levels is significant or not. Can I consider such a factor as significant if at least one modality (using a Wald-test) is significant? 3) Some models can be fitted with a gml but not with a gee? Is there any explanation for that? Any answer would be greatly appreciated, Christophe ------------------------------------------------------------------------ Bonenfant Christophe Laboratoire de Biom??trie et Biologie Evolutive UMR CNRS 5558 - Universit?? Claude Bernard L...

..., can R compute an ANOVA table like for GLM (seems that SAS does it)? The problem is to know whether a factor with more than 2 levels is significant or not. Can I consider such a factor as significant if at least one modality (using a Wald-test) is significant? 3) Some models can be fitted with a gml but not with a gee? Is there any explanation for that? Any answer would be greatly appreciated, Christophe ------------------------------------------------------------------------ Bonenfant Christophe Laboratoire de Biom??trie et Biologie Evolutive UMR CNRS 5558 - Universit?? Claude Bernard L...

After writing some code (stupidly without checking to see if there was code to do this already) to generate PostGIS SQL insert statements for simple geometry (wkt), I didn't check see if there is already something available to convert WKT strings into some R package geometry (sp?). Does anyone have any advice, hints, code (?) for converting the following OpenGIS strings into something

Dear R users, I would like to draw map and import it in maptools/spatstat packages. The 'raw data' I have come from a web page (<map>...</map>) and are basically a list of coordinates of a polygon. I would like to know how to import them in R; I checked the maptools packages, but all the examples use existing .dbf files. I just have a (serie of) text file(s) looking like

...more logs, specifically, the items before that Error > > occurs. > > Thanks, Tom. Below, you can find more logs: > > --------------------- > # define strdup igraph_i_strdup > > In file included from /usr/include/string.h:634:0, > from src/foreign-gml-parser.y:54: > /usr/include/bits/string2.h:208:0: note: this is the location of the > previous definition > # define strdup(s) __strdup (s) > > gcc -m64 -I/usr/include/R -DNDEBUG -I/usr/local/include -DUSING_R > -I. -Iinclude -Ics -Iglpk -Iplfit -ICHOLMOD/Include -IAMD/Incl...

...many more. - Functions for graph and subgraph isomorphism, the BLISS and the VF2 algorithms are included. - Functions for maximal network flows, minimal cuts, vertex and edge connectivity. - igraph can read and write many popular file formats used for storing graph data: GraphML, Pajek, GML and others. - igraph contains implementations of many community structure detection algorithms proposed recently. See more at the igraph homepage: http://cneurocvs.rmki.kfki.hu/igraph/index.html -- Csardi Gabor <csardi at rmki.kfki.hu> _______________________________________________ R...

...many more. - Functions for graph and subgraph isomorphism, the BLISS and the VF2 algorithms are included. - Functions for maximal network flows, minimal cuts, vertex and edge connectivity. - igraph can read and write many popular file formats used for storing graph data: GraphML, Pajek, GML and others. - igraph contains implementations of many community structure detection algorithms proposed recently. See more at the igraph homepage: http://cneurocvs.rmki.kfki.hu/igraph/index.html -- Csardi Gabor <csardi at rmki.kfki.hu> _______________________________________________ R...