search for: glmmtmb

Hi folks, I love the Phia package andwant to use it with glmmTMB, but when i try to use the interactionMeans command, i get the below error modelrepeatedmain2 <- glmmTMB(counts ~ cluster*nominated*nominator*junior_senior+Ltime+ (1|school)+(1|id), data=d_shortf, family=nbin...

...people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Thu, Sep 14, 2017 at 2:26 PM, Joseph Ciarrochi <ciarrochij at gmail.com> wrote: > Hi folks, > > I love the Phia package andwant to use it with glmmTMB, but when i try to > use the interactionMeans command, i get the below error > > modelrepeatedmain2 <- glmmTMB(counts ~ > cluster*nominated*nominator*junior_senior+Ltime+ > (1|school)+(1|id), > data=d_shortf, >...

Hi List, I'm having some trouble finding documentation for the package glmmTMB. I would like to fit a zero-truncated poisson, what do I need to specify in "family = " for this distribution? Thanks! Alice [[alternative HTML version deleted]]

...https://github.com/klutometis/roxygen/issues/378 closely related: https://github.com/klutometis/roxygen/issues/371 my current hacky solution to this is to use a Makefile that post-processes the NAMESPACE after it's roxygenized, e.g. search for "getRversion" in https://github.com/glmmTMB/glmmTMB/blob/master/Makefile

CRAN, by relying on the powerful package management system that is part of R, provides an unparalleled framework for extending R with nearly 20k packages. We recently encountered an issue that highlights a missing element in the otherwise outstanding package management system. So we would like to start a discussion about enhancing its feature set. As shown below, a mechanism to force

...t this should matter). I'm not sure what to try next. many thanks! Brandon Z > install.packages("sjPlot")Installing package into ?/home/drz/R/x86_64-pc-linux-gnu-library/3.4? (as ?lib? is unspecified)also installing the dependencies ?TMB?, ?blme?, ?arm?, ?effects?, ?ggeffects?, ?glmmTMB?, ?lme4?, ?merTools?, ?sjstats? trying URL 'https://cloud.r-project.org/src/contrib/TMB_1.7.14.tar.gz'Content type 'application/x-gzip' length 606414 bytes (592 KB)==================================================downloaded 592 KB trying URL 'https://cloud.r-project.org/src/con...

...equation}") and researching every package listed. Most seem to leverage gee (JGEE) or geepack (wgeesel), or lack a negative binomial family (PGEE, spind). Approach 2: GLMM I have become more familiar with GLMMs in R, so perhaps that is a better approach. I tried running GLMMs with package glmmTMB, but I am not sure I specified the random effect correctly (am I properly accounting for the repeated measures within AND between years?): m2 <- glmmTMB(Diract ~ DirPar*RecPar + offset(LnScan) + Year + (1|ID), data=Direct, family=list(family="nbinom1",link="log")) I furth...

...> > closely related: > > https://github.com/klutometis/roxygen/issues/371 > > my current hacky solution to this is to use a Makefile that > post-processes the NAMESPACE after it's roxygenized, e.g. search > for "getRversion" in > > https://github.com/glmmTMB/glmmTMB/blob/master/Makefile Hadley has the right idea (allow roxygen to specify some uninterpreted text to drop into the NAMESPACE file), but it doesn't go far enough. Really this is a design flaw in roxygen: being able to enter NAMESPACE and help page info in source files is a great feature...

Folks: I am getting a build failure when I: #' @importFrom utils shortPathName which roxygenizes it to the NAMESPACE. I suspect this is because this particular function is Windows-only, but I'm a bit confused how I should "properly" importFrom a function like this so it doesn't cause a build failure, but I don't get a note in my R CMD CHECK if I DON'T have it:

...of the functions supplied by the package: - cv() is a generic function with a default method and computationally efficient "lm" and "glm" methods, along with a method for a list of competing models. There are also experimental "merMod", "lme", and "glmmTMB" methods for mixed-effects models. cv() supports parallel computations. - mse() (mean-squared error) and BayesRule() are cross-validation criteria ("cost functions"), suitable for use with cv(). - cvSelect() cross-validates a selection procedure for a regression model. cvSel...

...of the functions supplied by the package: - cv() is a generic function with a default method and computationally efficient "lm" and "glm" methods, along with a method for a list of competing models. There are also experimental "merMod", "lme", and "glmmTMB" methods for mixed-effects models. cv() supports parallel computations. - mse() (mean-squared error) and BayesRule() are cross-validation criteria ("cost functions"), suitable for use with cv(). - cvSelect() cross-validates a selection procedure for a regression model. cvSel...

I am estimating fairly simple zero-inflated negative binomial models in glmmTMB. The models have just two factors and their interaction, a total of 4 levels. I was trying to use emmeans() to obtain estimates and 95% CI for these four levels. However, when I use emmeans() with the arguments component="response", type ="response", I do not get estimates th...

That is very strange. I am using Ubuntu 16.04 and managed to install it in less than 5 minutes. OA On Wed, Jan 10, 2018 at 12:00 PM, Luca Danieli <mr.lucedan at hotmail.it> wrote: > Hi all, > > I am new. I am installing the library sjPlot on Ubunto 16.10 and I guess > it is installing some dependencies. But it is taking more than 1.5 hours, > is it possible? > > It

..." "Ecfun" "emmeans" [17] "epigrowthfit" "evd" "Exact" "fitode" [21] "fixest" "ggfortify" "ggplot2" "GLMMadaptive" [25] "glmmTMB" "gratia" "hdm" "JMbayes" [29] "JointAI" "lava" "lme4" "lmeresampler" [33] "lmtest" "logistf" "MASS" "...

Hi all, I am new. I am installing the library sjPlot on Ubunto 16.10 and I guess it is installing some dependencies. But it is taking more than 1.5 hours, is it possible? It has right now halted (hope momentarily) in installing the package 'rstan', particularly the file lang__grammars__statement_grammar_inst.o Other packages installed include: dygraphs, colourpicker, raster. Is it good

? Tue, 21 May 2024 08:00:11 +0000 Dario Strbenac via R-devel <r-devel at r-project.org> ?????: > Would a less resource-intensive value, such as 1, be a safer default > CPU value for confint? Which confint() method do you have in mind? There is at least four of them by default in R, and many additional classes could make use of stats:::confint.default by implementing vcov(). >