search for: geneland

...m is not documented): C:\Program Files\R\rw2000\src\gnuwin32>make libR.a libRblas.a dlltool -k --as as --dllname R.dll --def R.exp --output-lib libR.a make: *** [libR.a] Error 255 But still, I tried to build my package by C:\Documents and Settings\guillot\Mes documents\package>Rcmd check geneland and got : * checking for working latex ...latex: not found NO * using log directory 'C:/Documents and Settings/guillot/Mes documents/package/ eneland.Rcheck' * checking for file 'geneland/DESCRIPTION' ... OK * checking if this is a source package ... OK installing R.css in C:/...

I am getting the above warning following loading of Geneland 3.1.5 on unix , while a simple plot sends output to the pdf file ( see attached code) no output results from Geneland functions, resulting in empty pdf files > library (Geneland) Loading required package: RandomFields Loading required package: fields Loading required package: spam Package...

...am receiving the above error ( full r session output below) the script runs OK in windows. and "genotypes" and "ploidy" are both correct arguments any suggestions would be most welcome Nevil Amos MERG/ACB Monash University School of Biological Sciences > library(Geneland) Loading required package: RandomFields Loading required package: fields Loading required package: spam Package 'spam' is loaded. Spam version 0.21-0 (2010-03-13). Type demo( spam) for some demos, help( Spam) for an overview of this package. Help for individual functions is optained by addi...

...9.0 (but hope to do it for windows too). I have trouble for loading my fortran code. Here are the steps involved : 1) In R: # Create tree for package # and include my R functions in it R> package.skeleton(name="Geneland", list=c("mcmcFmodel", "simFmodel", "rdiscr", "tessel.post"), path="/home/guillot/projets/flux/package/", force=T)...

I do the these passages: library(Geneland) set.seed(1) data <- simdata(nindiv=200, coord.lim=c(0,1,0,1) , number.nuclei=5 , allele.numbers=rep(10,20), IBD=FALSE, npop=2, give.tess.grid=FALSE) geno <- data$genotypes coord <- t(data$co...

I am trying to use the function 'filter.NA=TRUE' in Geneland. The function appears to be set on TRUE by default, as it appears as TRUE in the 'parameter.txt' file output and hence I do not need to enter the function per se (as it is an 'Unused argument otherwise') . Hence all my missing data (individuals that I have not yet scored at tha...

Hello, anybody know the procedure to plot the geneland result in a map? thank you ********************************************************** Vincenzo Landi Post Doctorate student Animal genomic and breeding cell:0039/3395388713 Fax. 075-5857122 [[alternative HTML version deleted]]

Hi all, I would like to multithread that script, to detect structure from multilocus genetic data : >library(Geneland) > >geno = read.table("cot966gen_test.txt") #the file is show after >MCMC(geno.dip.codom = geno, varnpop=T, npopmax=20, spatial = F, nit=100000, thinnin=100, path.mcmc="./") >PostProcessChain(path.mcmc="./", nxdom=100, nydom=100, burnin=200) I have an 8 co...

I am trying to format data for the Geneland package I need to write a series of paired numbers and paired "000" to a plain ascii file without surrounding the numerals with quotes, the original data is in a matrix formatted paired strings, and written to file using write.table(x,"output filename",col.names=F,row.names=F)...

Dear all I'm developing a grafical interface for Geneland that is presently one of the R packages available. My first question is about refreshing the interface while running a very long process. run<-function(){ ? ? ? ? tttry <- tktoplevel() ? ? ? ? tkwm.geometry(tttry, "+200+200") ? ? ? ? tkwm.title(tttry,"wait") ? ? ? ?...

...yRankTests","g.data","gafit","gam","gamair","gamlss","gamlss.tr","GammaTest","gap","gbm","gclus","gcmrec","gdata","gee","geepack","genalg","Geneland","GeneNT","genetics","GeneTS","GenKern","geometry","geoR","geoRglm","ggm","ggplot","giRaph","gld","gllm","glmmML","glmpath","glpk","gmodels...

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I am trying to create a frequency distribution and I am a bit confused. Here are the commands I have entered: > data <- read.csv(file="40609_sortedfinal.csv",head=TRUE,sep=",") > NumberOfActionsByStatus = data$STATUS > NumberOfActionsByUser = data$ETS_LOGIN > NumberOfBidOffer = data$BID_OFFER > NumberOfActionsByUser.freq = table(NumberOfActionsByUser) >