search for: futimes

Dear R users, Please can you help me with a relatively straightforward problem that I am struggling with? I am simply trying to plot a baseline survivor and hazard function for a simple data set of lung cancer survival where `futime' is follow up time in months and status is 1=dead and 0=alive. Using the survival package: lung.wbs <- survreg( Surv(futime, status)~ 1, data=lung,

Hi John, Brilliant solution and the best sort - when you finally solve your problem by yourself. Jim On Thu, Oct 1, 2020 at 2:52 AM array chip <arrayprofile at yahoo.com> wrote: > > Hi Jim, > > I found out why clip() does not work with lines(survfit.object)! > > If you look at code of function survival:::lines.survfit, in th middle of the code: > > do.clip <-

[code]>require("survival") > coxph(Surv(futime,fustat)~age + strata(rx),ovarian) Call: coxph(formula = Surv(futime, fustat) ~ age + strata(rx), data = ovarian) coef exp(coef) se(coef) z p age 0.137 1.15 0.0474 2.9 0.0038 Likelihood ratio test=12.7 on 1 df, p=0.000368 n= 26, number of events= 12 > coxph(Surv(futime,fustat)~age, ovarian, subset=rx==1)

Hi all, Using: R version 2.8.1 Patched (2009-03-07 r48068) on OSX (10.5.6) with survival version: Version: 2.35-3 Date: 2009-02-10 I get the following using the first example in ?summary.survfit: > summary( survfit( Surv(futime, fustat)~1, data=ovarian)) Call: survfit(formula = Surv(futime, fustat) ~ 1, data = ovarian) time n.risk n.event survival

Dear All, reposting, because I did not find a solution, maybe someone could check the example below. It's taken from the help page of survdiff. Executing it, gives the error "Error in floor(temp) : Non-numeric argument to mathematical function" best regards, Heinz library(survival) ## Example from help page of survdiff ## Expected survival for heart transplant patients based

Hello, I am having some trouble with the 'censoring-adjusted C-index' by Uno et al, in the package survAUC. The relevant function is UnoC. The question has to do with what happens when I specify a time point t for the upper limit of the time range under consideration (we want to avoid using the right-end tail of the KM curve). Copying from the example in the help file: TR <-

Dear R-users, I need to use the aftreg function in package 'eha' to estimate failure times for left truncated survival data. Apparently, survreg still cannot fit such models. Both functions should be fitting the accelerated failure time (Weibull) model. However, as G?ran Brostr?m points out in the help file for aftreg, the parameterisation is different giving rise to different

I am trying to fit a lognormal distribution on interval-censored data. Some of my intervals have a lower bound of zero. Unfortunately, it seems like survreg() cannot deal with lower bounds of zero, despite the fact that plnorm(0)==0 and pnorm(-Inf)==0 are well defined. Below is a short example to reproduce the problem. Does anyone know why survreg() must behave that way? Is there an alternate

Hola Estoy tratando de correr un survival analysis usando un Cox regression model. Tengo una duda respecto a la organizacion del script. Tengo una variable que es -tamano del individuo- y quiero ver si hay diferencia en sobrevivencia respecto a tamano. Como diseno de campo los tamanos fueron ubicados de forma aleatoria en bloques al azar. Cuado planteo el script tengo algo como:

Hi, I've been trying to get LLVM working as a JIT compiler on Android for a while. It works now, except that the setLastModificationAndAccessTime function won't build because the Bionic C library lacks both futimes and futimens. There doesn't appear to be any "nice" workaround for this problem: the only ways I can think of to make setLastModificationAndAccessTime work are either to go by /proc/self/fd or invoke the system call directly (the second option isn't helped by the fact that th...

...p.c > cc -g -D__i386__ -o makedep makedep.o > ../tools/makedep -C. -S.. -T.. -I/usr/include/freetype2 fnt2bdf.c fnt2fon.c make_ctests.c makedep.c relpath.c sfnt2fnt.c > `makedep' is up to date. > ../../tools/makedep -C. -S../.. -T../.. ffs.c fstatvfs.c futimes.c getopt.c getopt1.c getpagesize.c gettid.c interlocked.c isinf.c isnan.c lstat.c memcpy_unaligned.c memmove.c mkstemps.c poll.c pread.c pwrite.c readlink.c spawn.c statvfs.c strcasecmp.c strerror.c strncasecmp.c symlink.c usleep.c > cc -c -I. -I. -I.....

Hi, Is it normal to get intercept in the list of covariates in the output of survreg function with standard error, z, p.value etc? Does it mean that intercept was fitted with the covariates? Does Value column represent coefficients or some thing else? Regards, ------------------------------------------------- tmp = survreg(Surv(futime, fustat) ~ ecog.ps + rx, ovarian,

Hi Rs, I am analyzing a time to event dataset with several competing risks. 0 = Active by end of study 1 = Stopped treatment to start another treatment 2 = Lost 3 = Dead My event of interest in Lost to Followup but starting a different treatment and dying are competing risks. All 1,2,3 events are events of exiting the study, but it's only 2-LTFU that we are concerned with (I know I am

Dear All: I have some questions about the output of coxph. Below is the input and output: ---------------------------------------- > coxph(formula = Surv(futime, fustat) ~ age + rx + ecog.ps, data = + ovarian, x = TRUE) Call: coxph(formula = Surv(futime, fustat) ~ age + rx + ecog.ps, data = ovarian, x = TRUE) coef exp(coef) se(coef) z p age 0.147 1.158

R-users & helpers: I am using Amelia, mitools and cmprsk to fit cumulative incidence curves to multiply imputed datasets. The error message that I get "Error in eval(expr, envir, enclos) : invalid 'envir' argument" occurs when I try to fit models to the 50 imputed datasets using the "with.imputationList" function of mitools. The problem seems to occur

..._SETRESUID + /* Define if you have the setrlimit function. */ #undef HAVE_SETRLIMIT --- configure.orig Thu Jun 7 14:12:53 2001 +++ configure Thu Jun 7 14:13:40 2001 @@ -3184,7 +3184,7 @@ fi -for ac_func in arc4random atexit b64_ntop bcopy bindresvport_sa clock fchown fchmod freeaddrinfo futimes gai_strerror getcwd getaddrinfo getgrouplist getnameinfo getrlimit getrusage getttyent getusershell glob inet_aton inet_ntoa inet_ntop innetgr login_getcapbool md5_crypt memmove mkdtemp on_exit openpty realpath rresvport_af setdtablesize setenv setegid seteuid setlogin setproctitle setresgid setreu...

...:30 AM, James Lyon <jameslyon0 at gmail.com> wrote: > Hi, > > I've been trying to get LLVM working as a JIT compiler on Android for a > while. It works now, except that the setLastModificationAndAccessTime > function won't build because the Bionic C library lacks both futimes and > futimens. There doesn't appear to be any "nice" workaround for this > problem: the only ways I can think of to make > setLastModificationAndAccessTime work are either to go by /proc/self/fd or > invoke the system call directly (the second option isn't helped by t...

Dear all, I am using R 3.4.3 on Windows 10. I am preparing some teaching materials and I'm having trouble matching the by-hand version with the R code. I have fitted a Cox model - let's use the ovarian data as an example: library(survival) data(ovarian) ova_mod <- coxph(Surv(futime,fustat)~age+rx,data=ovarian) If I want to make predict survival for a new set of individuals at 100

...0 at gmail.com>> wrote: > > Hi, > > I've been trying to get LLVM working as a JIT compiler on Android > for a while. It works now, except that the > setLastModificationAndAccessTime function won't build because the > Bionic C library lacks both futimes and futimens. There doesn't > appear to be any "nice" workaround for this problem: the only ways > I can think of to make setLastModificationAndAccessTime work are > either to go by /proc/self/fd or invoke the system call directly > (the second option isn...

Dear R users, I am trying to use "muhaz" and "plot.muhaz" functions in "muhaz" package to estimate and plot hazard funciton. However function "muhaz" always gives error message "Error in Surv(times, delta) : object "times" not found". I could not even run their sample codes in the user's manual as follows: data(ovarian)