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...%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/ UK. WC1E 6BT. [w] http://www.freshwaters.org.uk %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

...ass{article} \begin{document} <<options, echo=FALSE, hide=TRUE>>= options(SweaveSyntax = "SweaveSyntaxNoweb") library(Hmisc) @ <<code>>= salmon <- data.frame(cbind(c(rep(0,49),rep(1,51)), rnorm(100), rnorm(100))) names(salmon) <- c("country","freshwater","marine") model1 <- glm(country~freshwater+marine, family="binomial", data=salmon) summary(model1) model1r <- round(drop1(model1),3) @ Here is some problem code. <<problemcode, results=tex>>= latex(model1r, file="", caption="signficance...

...rovided in a report. The help file for termplot() suggests they're standard errors (se=T), but in the code the se.fit values from predict() are multiplied by 2, suggesting it's a rough 95% confidence interval, is that right? Many thanks, Eric Goodwin Scientific data analyst | Coastal and Freshwater Group Cawthron Institute Phone +64 (0)3 548 2319 | Mobile 027 439 1141 eric.goodwin at cawthron.org.nz<mailto:eric.goodwin at cawthron.org.nz> | www.cawthron.org.nz<http://www.cawthron.org.nz/> ##################################################################################### No...

Hello there, I'm trying to plot vectors with p<0.1 in a NMDS ordination plot using p.max. Below the scripts I'm using. I guess I'm missing something! could you please give me a hand? species<-metaMDS(species_matrix)ef<-envfit(species,environmentaldata_file,permu=999,na.rm=TRUE)efplot(species, dis="sites")plot(ef,p.max=0.1) Error in plot.envfit(ef, p.max = 0.1) :

Dear R, the condition: identical(length(x),1) returns FALSE but print(length(x)) returns 1 and: is.vector(x) is TRUE. is.integer(length(x)) is TRUE length(x) ==1 is TRUE I am puzzled. Regards -- Corrado Topi Global Climate Change & Biodiversity Indicators Area 18,Department of Biology University of York, York, YO10 5YW, UK Phone: + 44 (0) 1904 328645, E-mail: ct529 at york.ac.uk

Hi I am trying to run Factor Analysis using R...I am using the syntax factanal(m1, factors=3) but it's giving me an message Error in cov.wt(z) : 'x' must contain finite values only ...I am using a data set which is having only numeric variables and have some NA's also in it..What should I do next..Someone please help me out with the syntax..Thanks in advance Cheers Arup --

...Blue Oak Woodland Chamise-Redshank Chaparral Closed-Cone Pine-Cypress 0 0 0 Cropland Desert Scrub Douglas-Fir 0 0 0 Eastside Pine Freshwater Emergent Wetland Jeffrey Pine 0 0 11342 Joshua Tree Juniper Lacustrine 0 1293 501 Lodgepole Pine Low Sage Mixed Chaparral...

Sorry to disturb you, but can you help me to solve one little problem? I want to draw a graphic after another with R but I cannot find the first one after that. Do you know the command to hold the graphic with R? I remember with Matlab you may use "hold on". Thanks. -- Baohua Yang Email:yangbaohua@gmail.com [[alternative HTML version deleted]]

Hello List, My question is an elementary one. I have run a fuzzy kmeans cluster using FANNY to group freshwater fish assemblages. I then went in the field to validate that classification and have retrieved new assemblage data for a new suite of streams. Therefore I would like to use Predict to determine how well the original clustering fits the new data. However I have not figured out a straightforward way...

Hello, I'm wondering if there are any packages/functions that can perform conditional sequential gaussian simulation. I'm following an article written by Grunwald, Reddy, Prenger and Fisher 2007. Modeling of the spatial variability of biogeochemical soil properties in a freshwater ecosystem. Ecological Modelling 201: 521 - 535, and would like to explore this methodology. Thanks Steve Steve Friedman, PhD Everglades Division Senior Environmental Scientist, Landscape Ecology South Florida Water Management District 3301 Gun Club Road West Palm Beach, Florida 3...

Hi, I am looking at the effect of allelochemicals produced by two freshwater macrophyte species on two different algal species at different days. I am comparing the effect of each macrophyte on each algae at each day. I received help from someone doing the LMEM (Linear mixed-effect models) and he told me to do ANOVA to analyse the LMEM. However, I received these feedback...

Hi, there, I cannot get accurate value for calculation. for example: ld<-sqrt(1*0.05*0.95*0.05*0.95) 0.05*0.95-ld=-6.938894e-18 0.05*0.95-ld==0 is False. I met this problem in my program, how can I handle it. Thanks. xj.

...erging the 3 slices? Alternatively, is there a way to extend the pointing lines, so that they could be different heights so as to avoid the overlap. Thank you! Melanie ____________________________________________ Melanie Zölck (Zoelck) PhD Candidate Galway-Mayo Institute of Technology Marine and Freshwater Research Centre Commercial Fisheries Research Group Department of Life Science Dublin Road Galway Republic of Ireland Mobile: +353 (0) 85 7246196 Skype: melaniezoelck E-mail: mzoelck@gmx.com or mzoelck@hotmaill.com [[alternative HTML version deleted]]

Dear all, Are there any functions in R to reverse the order of the string. smth like reverse("abc") to get "cba"? Thanks a lot. [[alternative HTML version deleted]]

...%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/ UK. WC1E 6BT. [w] http://www.freshwaters.org.uk %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

...%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/ UK. WC1E 6BT. [w] http://www.freshwaters.org.uk %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

...%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/ UK. WC1E 6BT. [w] http://www.freshwaters.org.uk %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%

I have source a script running with no errors that ends in these lines: ============== for (i in 2:3) win.graph() dev.set(2) levelplot(avg ~ procs * size, rrt, drape=T, colorkey=T,main="ops/sec",scales=list(x=list(tick.number=15),y=list(log=10))) dev.set(3) levelplot(avg ~ procs * size, ort, drape=T, colorkey=T,main="ops/sec",scales=list(x=list(tick.number=15),y=list(log=10)))

...%~%~%~%~%~% Dr. Gavin Simpson [t] +44 (0)20 7679 0522 ECRC, UCL Geography, [f] +44 (0)20 7679 0565 Pearson Building, [e] gavin.simpsonATNOSPAMucl.ac.uk Gower Street, London [w] http://www.ucl.ac.uk/~ucfagls/ UK. WC1E 6BT. [w] http://www.freshwaters.org.uk %~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~%~% -------------- next part -------------- A non-text attachment was scrubbed... Name: influence.measures.Rd.diff-patched Type: text/x-patch Size: 263 bytes Desc: not available URL: <https://stat.ethz.ch/pipermail/r-dev...

...terval, is that right? I would assume they are what the help file says, but if I wasn't sure, I'd work them out for a simple case from first principles, and compare to what the code gives. Duncan Murdoch > Many thanks, > > Eric Goodwin > Scientific data analyst | Coastal and Freshwater Group Cawthron > Institute Phone +64 (0)3 548 2319 | Mobile 027 439 1141 > eric.goodwin at cawthron.org.nz<mailto:eric.goodwin at cawthron.org.nz> | > www.cawthron.org.nz<http://www.cawthron.org.nz/> > > > ##########################################################...